genome.fa.s468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000468.1 Hibiscus syriacus cultivar Beakdansim tig00000866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85780

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4577--4616	21	1.9	21	85	10	55	22	40	25	12	1.89
13523--13561	18	2.1	19	85	4	53	20	7	5	66	1.36
15491--15617	64	2.0	66	81	12	156	34	18	18	28	1.95
16205--16287	23	3.6	23	91	0	130	20	28	25	25	1.99
22415--22542	64	2.0	67	84	10	176	34	20	18	26	1.96
23121--23189	23	3.0	23	79	8	86	21	26	24	27	1.99
26489--26540	25	2.1	25	100	0	104	17	7	11	63	1.50
32771--32806	18	1.9	19	88	5	56	58	5	0	36	1.22
38348--38391	15	2.9	15	80	10	54	40	0	0	59	0.98
39800--39862	3	21.0	3	87	12	94	63	0	0	36	0.95
39858--39886	4	7.5	4	92	7	51	79	0	0	20	0.74
39858--39887	15	2.0	15	100	0	60	80	0	0	20	0.72
40123--40181	17	3.4	17	68	25	50	15	25	11	47	1.79
40225--42035	113	16.0	113	94	1	3055	27	17	15	39	1.90
40225--42035	568	3.2	567	94	1	3086	27	17	15	39	1.90
42436--42490	22	2.5	22	90	0	92	38	14	12	34	1.84
42860--43060	54	3.8	52	82	7	221	24	21	14	39	1.91
45185--45506	114	2.8	114	92	2	511	31	21	15	31	1.94
47926--48015	2	45.0	2	100	0	180	50	0	0	50	1.00
50860--50913	14	3.8	14	80	2	54	50	9	14	25	1.73
52560--52606	21	2.1	21	84	7	58	65	2	2	29	1.15
53202--53244	14	2.9	15	82	6	61	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54593--54642	3	17.0	3	80	19	61	62	0	0	38	0.96
54598--54650	15	3.5	15	85	12	72	64	0	0	35	0.94
60154--60289	60	2.3	60	82	5	159	31	20	4	43	1.72
61188--61365	60	3.0	59	78	6	169	41	5	18	34	1.74
62682--62720	19	2.1	19	90	0	60	66	5	7	20	1.36
63590--63634	20	2.3	20	85	11	58	46	6	2	44	1.42
63946--63977	13	2.4	14	94	5	57	78	6	0	15	0.95
63944--63978	14	2.5	15	86	13	56	77	5	0	17	0.96
64045--64095	21	2.4	21	100	0	102	60	0	7	31	1.25
64868--65313	229	2.0	224	93	2	766	45	8	7	39	1.62
65379--65424	20	2.3	19	89	10	74	54	10	17	17	1.70
67797--67861	21	3.1	21	80	6	69	40	15	29	15	1.88
69746--69791	16	2.7	17	90	6	67	30	2	10	56	1.46
69908--71077	199	5.9	199	97	0	2191	37	15	15	31	1.90
69908--71077	397	2.9	397	97	0	2223	37	15	15	31	1.90
69908--71077	596	2.0	596	97	0	2225	37	15	15	31	1.90
72530--72591	18	3.4	18	79	0	79	37	9	35	17	1.83
72530--72621	6	15.3	6	79	0	67	36	7	34	20	1.81
72545--72625	3	27.0	3	75	0	72	35	6	34	23	1.80
72533--72609	36	2.1	36	90	0	118	35	9	35	20	1.85
72533--72621	12	7.4	12	84	0	88	35	7	34	21	1.82
72530--72621	18	5.1	18	77	0	76	36	7	34	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73727--73765	20	2.0	20	89	0	60	28	12	7	51	1.67
74067--74766	182	3.9	182	93	3	1168	36	14	16	33	1.88
77216--77271	25	2.2	25	87	0	76	33	8	14	42	1.77
77875--77921	23	2.0	23	88	8	69	34	8	21	36	1.84
78207--78243	18	2.1	18	89	0	56	32	5	10	51	1.60
78199--78245	24	2.0	24	86	0	67	34	4	14	46	1.64
78502--78582	38	2.1	38	95	0	144	46	20	14	17	1.83
79425--79472	23	2.1	23	92	0	78	35	18	10	35	1.85
80647--80688	19	2.2	19	100	0	84	14	4	33	47	1.65
81757--81787	6	5.2	6	92	0	53	32	12	19	35	1.90
83577--83601	9	2.8	9	100	0	50	12	0	44	44	1.41
85190--85229	17	2.4	17	100	0	80	20	42	27	10	1.83

Tables:   1

The End!