genome.fa.s4680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004680.1 Hibiscus syriacus cultivar Beakdansim tig00010494_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45275

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7215--7374	21	7.3	21	74	15	146	40	23	10	26	1.86
7216--7377	44	3.7	44	92	0	261	38	24	9	27	1.87
13224--13404	60	3.1	59	76	7	181	30	22	6	40	1.80
16861--16949	44	2.0	46	88	4	137	53	5	5	34	1.48
17812--17845	13	2.7	13	90	4	52	41	20	17	20	1.91
18323--18495	47	3.8	46	82	7	201	31	21	8	39	1.82
18600--18721	40	3.0	40	97	0	226	31	27	17	23	1.97
21753--21819	22	3.0	22	100	0	134	41	13	4	40	1.64
22475--22550	6	12.8	6	80	5	75	1	13	3	81	0.89
22468--22552	18	4.6	19	75	14	81	1	12	3	82	0.86
22464--22556	41	2.3	42	83	5	118	2	12	3	81	0.90
22467--22555	35	2.6	33	85	5	108	1	13	3	82	0.86
22465--22556	20	4.5	21	80	9	100	1	13	3	82	0.84
26854--26889	18	2.0	18	88	0	54	30	16	0	52	1.44
28192--28232	18	2.3	18	86	0	55	14	19	46	19	1.84
28184--28250	31	2.2	31	86	0	89	17	19	44	17	1.87
32017--32051	18	1.9	18	88	0	52	28	17	0	54	1.43
33346--33386	18	2.3	18	95	0	73	12	21	48	17	1.79
33340--33404	31	2.1	31	88	0	94	16	18	46	18	1.85
33340--33369	13	2.3	13	88	0	51	16	23	43	16	1.87
34664--34720	30	1.9	30	85	0	78	35	24	14	26	1.93
35102--35274	47	3.8	45	85	6	215	32	21	8	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35378--35538	40	4.1	40	95	1	297	33	26	17	22	1.96

Tables:   1

The End!