Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004681.1 Hibiscus syriacus cultivar Beakdansim tig00010495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74300

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2234--2284
26
2.0
26
88
0
75
37
17
11
33
1.86
12583--12643
31
1.9
32
90
3
97
31
11
9
47
1.72
13887--14007
60
2.0
61
88
1
181
37
5
9
47
1.59
13892--14024
60
2.2
61
83
4
162
38
5
8
48
1.56
14754--14814
24
2.5
24
97
0
113
16
24
22
36
1.94
19507--19541
12
2.9
12
86
0
52
28
8
40
22
1.84
24944--24982
2
19.5
2
100
0
78
48
0
0
51
1.00
33124--33190
19
3.5
19
85
6
100
20
17
16
44
1.86
33181--33233
21
2.5
22
87
3
72
18
16
24
39
1.91
34622--34724
50
2.1
50
100
0
206
53
15
23
7
1.68
49441--49489
22
2.2
22
89
7
73
44
16
6
32
1.72
49450--49491
22
1.9
22
100
0
84
42
16
9
30
1.80
50082--50121
2
20.0
2
100
0
80
50
0
0
50
1.00
52250--52321
20
3.6
20
88
0
108
27
27
8
36
1.86
54364--55087
112
6.5
112
91
0
1106
28
13
12
45
1.79
54362--55256
224
4.1
223
88
3
1243
28
13
12
46
1.79
54362--55256
336
2.7
334
87
4
1279
28
13
12
46
1.79
54985--55180
92
2.1
92
89
0
293
25
12
13
49
1.76
54873--55256
204
1.9
205
93
0
662
25
12
13
48
1.78
55344--55594
74
3.4
73
82
3
306
34
13
11
40
1.80
55934--55972
11
3.5
11
93
6
69
82
0
0
17
0.68
55935--55972
12
3.2
12
92
7
69
84
0
0
15
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61958--61996
19
2.1
19
100
0
78
53
10
10
25
1.66
73912--73959
16
3.4
14
76
23
55
6
14
27
52
1.66

Tables:   1

The End!