Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004682.1 Hibiscus syriacus cultivar Beakdansim tig00010496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61604

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4655--4704
21
2.3
22
83
10
59
82
2
14
2
0.86
4658--4705
19
2.6
17
87
9
60
81
4
12
2
0.93
4740--4810
19
3.6
19
82
17
76
78
2
16
1
0.94
4741--4800
27
2.2
27
88
8
95
76
3
18
1
1.00
5704--6053
120
2.9
121
79
7
393
34
22
15
27
1.94
7693--7733
13
3.2
13
89
3
57
12
2
2
82
0.86
7693--7806
12
8.7
12
71
21
70
18
5
0
75
1.04
7739--7869
3
44.0
3
71
23
59
27
3
1
67
1.17
7705--7774
20
3.5
20
81
12
81
20
2
0
77
0.90
8072--8145
10
7.3
11
69
22
54
14
10
0
74
1.07
8116--8145
15
2.1
15
93
6
53
13
6
0
80
0.91
16939--16994
26
2.2
26
83
6
69
30
12
7
50
1.67
17481--17607
47
2.8
45
87
5
175
39
7
22
29
1.83
24643--24768
47
2.8
45
84
5
155
38
7
23
30
1.83
25215--25267
22
2.4
22
100
0
106
20
35
20
22
1.96
25268--25297
7
4.3
7
95
0
51
26
30
3
40
1.72
28683--28718
18
2.0
18
94
0
63
36
11
22
30
1.89
29881--30068
75
2.5
76
85
5
272
47
3
8
40
1.50
29887--30068
39
4.8
39
86
4
273
48
3
7
40
1.48
30060--30099
20
2.0
20
95
0
71
35
0
17
47
1.48
30121--30184
4
16.8
4
76
23
59
20
4
0
75
0.99
30133--30186
11
4.7
11
78
17
65
22
3
0
74
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30132--30196
28
2.2
28
84
15
87
18
6
1
73
1.11
31498--31524
12
2.2
12
100
0
54
14
0
0
85
0.61
31632--31675
4
11.2
4
80
4
54
29
2
0
68
1.02
31632--31681
12
4.3
12
76
16
52
30
2
0
68
1.01
31635--31672
20
1.9
19
94
5
67
28
2
0
68
1.03
37150--37350
66
3.1
62
85
9
260
45
3
7
43
1.51
37203--37255
25
2.1
25
86
10
72
45
5
5
43
1.51
37255--37319
27
2.4
28
87
7
91
44
6
9
40
1.61
37280--37387
39
2.8
40
87
6
143
42
2
6
48
1.43
37151--37373
66
3.4
66
79
14
248
45
4
6
43
1.49
37384--37423
20
2.0
20
85
0
53
35
2
15
47
1.58
41579--41633
23
2.4
23
96
0
101
41
16
16
25
1.88
41581--41633
10
4.6
12
78
21
60
41
16
15
26
1.88
43456--43519
33
1.9
33
87
6
94
68
0
3
28
1.04
44093--44124
12
2.7
12
90
0
55
59
3
28
9
1.44
46549--46670
40
3.0
40
97
0
235
22
16
27
33
1.95
46775--46900
47
2.8
45
84
5
164
39
7
23
30
1.81
53616--53733
40
3.0
40
97
0
218
22
17
27
32
1.96
53849--53974
47
2.8
45
85
5
164
39
7
23
29
1.83
58429--58534
5
21.0
5
72
9
81
69
2
6
20
1.24
58486--58536
26
2.0
26
88
7
77
74
1
5
17
1.11

Tables:   1

The End!