genome.fa.s4684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004684.1 Hibiscus syriacus cultivar Beakdansim tig00010502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52730

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4747--4779	16	1.9	18	88	11	52	33	0	0	66	0.92
5073--5382	173	1.8	171	87	2	460	29	15	22	32	1.95
5071--5410	43	7.9	43	84	2	387	29	14	22	33	1.94
5071--5420	130	2.7	130	86	4	422	29	14	22	34	1.93
5875--5908	17	2.0	17	100	0	68	52	5	17	23	1.66
9554--9592	18	2.2	18	85	0	51	38	12	30	17	1.88
9623--9660	20	1.9	20	89	10	60	13	21	31	34	1.91
11014--11051	20	1.9	20	94	0	67	36	10	26	26	1.89
11595--11670	24	3.2	23	67	7	62	22	10	17	50	1.76
11576--11675	48	2.1	48	92	0	164	22	10	19	49	1.77
11691--11814	53	2.4	53	84	1	160	27	16	19	36	1.93
12852--13127	68	4.0	68	92	0	462	27	12	11	48	1.76
13006--13115	31	3.3	31	70	20	96	26	11	10	50	1.72
13210--13273	32	2.0	32	90	0	101	28	7	15	48	1.73
13743--13771	6	4.8	6	100	0	58	17	0	31	51	1.45
14768--14798	14	2.1	15	94	5	55	58	0	3	38	1.15
17353--17394	21	2.0	21	81	9	50	50	23	2	23	1.61
17365--17409	21	2.1	21	91	0	72	46	26	0	26	1.53
24200--24666	83	5.6	83	81	3	499	35	17	14	31	1.91
24200--24660	166	2.8	166	83	2	557	35	18	14	31	1.91
24201--24666	249	1.9	249	83	0	601	35	18	14	31	1.91
27483--27539	29	2.0	29	100	0	114	31	19	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28527--28551	13	1.9	13	100	0	50	40	16	16	28	1.89
28903--28933	3	10.3	3	92	0	53	29	0	0	70	0.87
33020--33118	2	53.5	2	69	22	56	43	3	3	50	1.33
33041--33115	15	4.9	16	72	15	61	44	2	1	52	1.23
33089--33138	21	2.6	19	81	15	50	42	2	2	54	1.23
33168--33268	52	2.0	50	81	11	116	35	1	5	56	1.35
34219--34267	19	2.6	19	100	0	98	26	8	14	51	1.70
36394--36480	31	2.8	31	94	3	149	33	20	14	31	1.93
37971--38105	2	72.0	2	68	25	73	51	5	0	42	1.29
38006--38106	5	21.4	5	74	18	92	55	1	0	42	1.11
38006--38106	52	1.9	52	84	7	134	55	1	0	42	1.11
38135--38175	21	1.9	22	90	5	66	43	4	2	48	1.37

Tables:   1

The End!