genome.fa.s4685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004685.1 Hibiscus syriacus cultivar Beakdansim tig00010503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136995

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5265--5327	21	2.9	21	83	4	63	20	38	25	15	1.92
5309--5348	21	1.9	21	89	0	62	25	40	25	10	1.86
10506--10986	175	2.7	176	92	3	788	33	17	14	34	1.90
12457--12537	3	27.0	3	75	0	72	23	34	6	35	1.80
12461--12549	12	7.4	12	84	0	88	21	34	7	35	1.82
12461--12552	18	5.1	18	77	0	76	20	34	7	36	1.81
12473--12549	36	2.1	36	90	0	118	20	35	9	35	1.85
12461--12552	6	15.3	6	79	0	67	20	34	7	36	1.81
14027--14950	199	4.9	181	90	7	1225	31	15	15	37	1.89
14205--14950	199	3.8	199	96	1	1367	31	15	15	37	1.89
15069--15117	19	2.6	19	93	0	80	57	10	2	30	1.43
16911--16976	33	2.0	33	90	0	105	22	48	0	28	1.51
17013--17074	21	3.0	21	74	9	63	17	27	14	40	1.89
19298--19340	20	2.3	18	85	14	61	20	16	11	51	1.75
19303--19349	20	2.4	19	82	10	67	19	17	10	53	1.72
19483--19528	20	2.3	20	96	0	83	17	15	8	58	1.61
19270--19741	182	2.6	180	88	2	685	26	16	14	42	1.86
19270--19743	180	2.6	179	88	2	678	26	16	14	42	1.86
25594--25631	2	18.5	2	94	5	67	50	2	0	47	1.15
34860--34906	3	15.7	3	78	8	51	34	2	0	63	1.06
34860--34911	21	2.5	21	83	0	59	32	3	1	61	1.25
36331--36361	16	1.9	16	93	0	53	38	3	3	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36583--36617	16	2.2	16	100	0	70	57	0	0	42	0.99
36759--36798	11	3.3	13	80	13	50	50	2	0	47	1.14
37270--37326	26	2.2	26	84	9	71	33	5	1	59	1.30
38815--38856	7	6.0	7	81	8	50	14	16	14	54	1.71
38815--38856	15	3.0	14	83	10	50	14	16	14	54	1.71
38916--38975	27	2.3	27	85	2	86	21	13	6	58	1.58
38915--38942	12	2.3	12	100	0	56	25	14	7	53	1.66
39668--39883	108	2.0	108	98	0	414	27	17	17	37	1.92
40838--40898	7	8.6	7	84	8	70	80	0	18	1	0.80
40839--40904	6	10.8	6	77	11	55	78	0	19	1	0.82
43063--43290	114	2.0	114	96	0	420	32	15	19	32	1.93
44302--44631	76	4.4	75	87	1	372	31	15	22	30	1.95
45912--45991	22	3.6	22	86	0	106	33	15	12	38	1.84
46353--46901	113	4.9	113	93	0	886	37	15	19	26	1.92
47239--47298	3	20.0	3	79	6	68	33	1	1	63	1.14
48796--48842	2	23.5	2	100	0	94	51	0	0	48	1.00
49176--49215	11	3.3	13	80	13	50	50	2	0	47	1.14
52957--53013	23	2.5	23	79	0	69	38	7	17	36	1.77
52963--53280	87	3.7	87	95	0	564	41	11	14	32	1.82
53041--53100	23	2.6	23	83	0	66	40	10	16	33	1.82
53128--53187	23	2.6	23	81	0	57	41	10	15	33	1.80
53215--53274	23	2.6	23	86	0	84	40	10	18	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53519--53570	24	2.2	24	80	16	65	55	5	0	38	1.24
53579--53623	14	3.1	14	81	15	56	42	0	2	55	1.12
53602--53680	28	2.8	29	77	12	76	50	1	1	46	1.17
53614--53684	28	2.4	31	77	17	78	52	1	1	45	1.18
54550--55217	198	3.4	198	87	3	927	38	14	15	31	1.87
55221--55277	23	2.4	23	73	2	60	38	17	8	35	1.81
62235--62353	35	3.3	36	89	5	179	43	18	5	32	1.72
62285--62345	21	3.2	21	63	29	55	42	19	4	32	1.73
66836--66949	35	3.2	36	85	5	142	44	18	1	35	1.60
72949--73021	36	2.0	36	86	0	101	43	4	17	34	1.68
77009--77383	125	3.0	125	97	0	714	35	8	10	44	1.70
106100--106153	22	2.5	22	82	8	67	72	11	0	16	1.12
117730--117764	2	17.5	2	93	0	61	48	2	0	48	1.16
120012--120064	19	2.8	19	100	0	106	16	22	33	26	1.96
120070--120206	65	2.1	65	84	2	177	33	18	19	28	1.95
121635--121778	42	3.4	42	91	2	225	34	20	9	36	1.85
123030--123084	17	3.3	17	72	20	53	50	7	9	32	1.61
124097--124139	21	2.0	22	86	4	61	16	25	25	32	1.96
124522--124693	94	1.8	95	82	8	226	30	22	12	34	1.92
124938--124987	20	2.5	20	80	0	55	44	12	14	30	1.81
131979--132022	19	2.3	20	78	21	51	50	2	0	47	1.13
131980--132027	25	2.0	25	84	15	66	52	2	0	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132866--132912	22	2.2	22	88	3	69	10	25	34	29	1.90
135200--135335	58	2.3	60	77	11	138	33	17	13	34	1.90
136389--136504	56	2.1	56	85	6	155	41	4	9	44	1.56

Tables:   1

The End!