Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004686.1 Hibiscus syriacus cultivar Beakdansim tig00010505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144693

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4480--4537
27
2.1
27
87
6
82
39
5
0
55
1.22
4487--4538
27
2.0
26
96
3
95
38
5
0
55
1.24
5223--5264
19
2.3
19
87
4
59
30
4
2
61
1.29
5924--5967
21
2.1
21
86
0
61
25
9
20
45
1.80
7653--7725
34
2.1
34
89
0
110
57
17
9
15
1.64
14588--14625
17
2.2
17
95
0
67
34
28
7
28
1.85
17862--17912
25
2.0
25
88
7
77
68
0
3
27
1.07
18421--18492
28
2.4
29
78
17
78
59
9
6
23
1.53
18569--18652
43
2.0
43
81
9
100
54
4
10
29
1.55
20149--20274
58
2.2
58
92
0
207
34
11
21
32
1.90
25025--25583
111
5.0
112
83
2
593
22
24
24
28
1.99
30195--30238
14
3.1
14
81
15
54
29
0
2
68
1.02
41835--41875
14
2.9
14
88
0
55
29
14
19
36
1.92
42166--42236
23
3.1
23
77
2
72
49
1
1
47
1.18
42226--42365
55
2.6
55
75
20
143
49
1
0
48
1.15
42294--42357
19
3.8
16
70
22
58
50
0
1
48
1.10
42324--42375
22
2.4
22
83
6
70
57
0
0
42
0.98
42546--42653
41
2.6
42
85
5
148
51
13
10
24
1.72
47149--47255
32
3.3
32
70
7
99
54
7
0
37
1.35
47134--47255
65
1.9
64
93
1
208
51
7
0
40
1.36
48960--48989
15
2.0
15
100
0
60
40
6
6
46
1.56
49733--50037
66
4.8
66
85
7
412
26
19
42
11
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51458--51500
21
2.1
20
86
4
59
60
6
4
27
1.43
58189--58227
19
2.1
19
85
0
51
43
7
20
28
1.79
58232--58291
26
2.3
26
100
0
120
41
15
25
18
1.89
82015--82059
23
2.0
23
100
0
90
22
6
35
35
1.80
82084--82235
78
1.9
78
94
0
268
32
19
18
29
1.96
87258--87311
27
2.0
27
100
0
108
25
25
18
29
1.98
87258--87304
16
3.2
16
66
27
50
27
25
17
29
1.97
100476--100518
20
2.2
20
91
0
68
51
16
0
32
1.45
100980--101054
23
3.3
23
79
3
71
54
21
12
12
1.69
103522--103738
31
7.0
31
89
3
312
25
16
22
36
1.94
103537--103742
94
2.2
93
87
5
299
26
15
22
34
1.94
104451--104492
21
2.0
21
90
0
66
26
23
28
21
1.99
109886--109968
33
2.6
31
87
9
114
12
9
37
40
1.75
109922--110263
180
1.9
181
92
0
578
25
11
27
36
1.89
110959--111022
18
3.7
18
93
4
105
26
32
7
32
1.85
127725--127753
2
14.5
2
100
0
58
51
0
0
48
1.00
127915--127948
17
2.0
17
100
0
68
23
17
35
23
1.95
129031--129075
22
2.0
22
86
0
63
33
0
15
51
1.44
130867--130915
21
2.3
21
100
0
98
28
8
24
38
1.84
136047--136087
21
2.0
21
90
0
64
34
2
24
39
1.69
136526--136570
21
2.1
21
83
0
54
46
4
13
35
1.63

Tables:   1

The End!