genome.fa.s4687.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004687.1 Hibiscus syriacus cultivar Beakdansim tig00010514_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69855

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703--767	5	13.2	5	75	15	55	76	0	6	16	0.97
732--777	14	3.3	13	82	11	56	80	2	2	15	0.91
2102--2163	29	2.2	28	79	2	70	30	11	14	43	1.80
5314--5340	2	13.5	2	100	0	54	51	0	0	48	1.00
5749--5787	4	9.8	4	88	0	60	51	20	2	25	1.60
8966--9019	21	2.4	24	74	20	62	57	1	3	37	1.27
18295--18413	21	5.8	20	78	8	96	36	21	19	22	1.95
18381--18574	20	9.6	20	80	7	196	35	26	19	19	1.95
18381--18573	60	3.2	60	82	6	230	34	26	19	19	1.96
18953--19023	33	2.2	33	94	0	124	11	23	16	47	1.79
19103--19209	21	5.6	20	71	17	93	46	19	20	13	1.83
19164--19220	14	3.7	14	75	20	60	43	22	24	8	1.81
19157--19236	33	2.4	33	95	0	142	47	22	21	8	1.78
19254--19310	14	3.7	14	75	20	60	8	24	22	43	1.81
19237--19318	33	2.5	33	100	0	164	9	23	19	47	1.79
19295--19359	21	3.1	21	77	4	87	12	26	13	47	1.78
21042--21264	93	2.4	93	99	0	437	22	13	18	44	1.85
21397--21455	14	3.9	14	76	20	64	47	28	16	6	1.72
21378--21467	33	2.7	33	92	0	153	48	26	16	7	1.73
21362--21467	19	6.1	19	72	21	88	47	27	16	9	1.77
21472--21620	19	8.3	19	73	15	138	10	20	22	46	1.81
21489--21545	14	3.7	14	75	20	51	10	22	22	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21472--21602	33	3.8	33	84	9	181	9	21	22	46	1.80
23546--23581	14	2.6	14	95	0	63	33	0	22	44	1.53
23688--23766	19	4.4	19	80	16	105	45	17	22	13	1.84
23775--23963	19	10.7	19	76	18	203	15	22	17	44	1.86
23781--23963	53	3.5	53	94	3	309	14	21	17	45	1.84
23798--23977	86	2.1	84	85	12	233	13	22	17	46	1.84
23798--23977	33	5.2	33	71	18	152	13	22	17	46	1.84
26258--26282	12	2.1	12	100	0	50	0	28	0	72	0.86
26457--26503	24	2.0	24	87	8	69	38	21	14	25	1.92
27195--27423	20	11.4	20	85	1	226	19	17	25	37	1.94
31224--31300	21	3.6	21	77	10	84	55	1	2	40	1.22
35989--36077	29	3.1	29	100	0	178	13	31	37	17	1.89
36099--36135	18	2.1	18	100	0	74	37	24	21	16	1.93
36117--36252	44	3.1	44	100	0	272	27	13	42	16	1.86
36224--36403	15	11.1	15	72	17	137	21	7	53	17	1.69
36211--36337	65	1.9	66	95	3	229	23	9	50	16	1.74
36226--36402	82	2.2	83	84	4	234	21	7	53	17	1.69
36214--36407	65	3.0	64	81	12	207	22	8	52	17	1.70
36289--36430	51	2.8	51	95	3	254	20	7	53	18	1.69
36503--36566	32	2.0	32	100	0	128	21	25	21	31	1.98
36876--36924	21	2.3	21	82	3	62	32	0	16	51	1.45
36901--36961	28	2.2	28	93	0	104	32	0	11	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37467--37511	21	2.2	21	84	4	56	35	0	8	55	1.31
38877--38967	45	2.0	47	87	8	134	46	12	0	41	1.41
38898--39036	41	3.3	40	76	14	111	46	11	0	41	1.45
39173--39230	4	14.0	4	75	7	53	5	31	0	63	1.16
39173--39230	25	2.3	25	90	0	89	5	31	0	63	1.16
39292--39343	25	2.1	25	92	0	86	28	32	9	28	1.89
39464--39510	23	2.0	23	95	0	85	21	8	42	27	1.81
39497--39528	13	2.5	13	94	0	55	31	3	46	18	1.65
39529--39619	29	3.1	29	95	0	164	23	30	31	14	1.94
39529--39637	29	3.8	29	90	2	139	22	30	31	15	1.95
39631--39879	43	5.9	43	69	17	216	18	33	25	22	1.96
39692--39907	41	5.2	41	65	20	142	17	31	27	23	1.96
39649--39910	84	3.1	84	98	0	506	17	32	27	22	1.97
39886--39998	35	3.2	35	100	0	226	19	20	33	26	1.96
49168--49225	29	1.9	30	86	6	82	44	1	13	39	1.54
54351--54569	83	2.6	82	84	6	255	25	17	23	33	1.96
54515--54625	58	1.9	58	94	0	195	22	19	25	32	1.98
54433--54717	142	2.0	141	93	0	489	24	17	23	33	1.96
54573--54902	84	3.9	84	81	3	396	26	17	21	34	1.95
54573--54902	167	2.0	168	85	1	448	26	17	21	34	1.95
55630--55739	43	2.6	43	83	4	141	22	13	29	34	1.93
56329--56400	32	2.2	33	82	4	85	34	22	8	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67364--67419	27	2.1	27	86	6	78	3	16	42	37	1.65

Tables:   1

The End!