Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000469.1 Hibiscus syriacus cultivar Beakdansim tig00000872_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44315

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2598--2622
7
3.6
7
100
0
50
32
0
0
68
0.90
4189--4268
6
14.2
6
73
21
66
1
32
11
55
1.43
4189--4265
21
3.8
21
93
3
122
1
32
10
55
1.42
4666--4742
3
26.7
3
74
17
56
61
0
0
38
0.96
4658--4724
11
6.3
11
77
14
52
56
0
0
43
0.99
4667--4742
32
2.5
31
81
14
79
60
0
0
39
0.97
4658--4743
9
9.0
9
69
20
50
60
0
0
39
0.97
4676--4742
14
4.8
13
80
9
55
61
0
0
38
0.96
12195--12248
23
2.3
23
78
12
65
44
1
0
53
1.11
25476--25517
21
1.9
21
85
9
57
2
9
9
78
1.05
25466--25505
13
3.1
13
88
0
62
2
12
10
75
1.15
29646--29682
19
1.9
19
94
0
65
32
29
16
21
1.95
29771--29882
20
5.6
20
86
6
163
29
28
18
23
1.98
29771--29904
41
3.3
41
84
6
182
32
26
17
23
1.97
29771--29904
61
2.2
61
80
7
148
32
26
17
23
1.97
30467--30569
53
1.9
54
90
2
163
14
16
21
47
1.82
30463--30571
20
5.8
20
71
12
79
13
16
21
48
1.80
32474--32555
20
4.1
20
92
6
121
34
24
20
20
1.97
32596--32633
20
1.9
20
94
0
67
47
18
21
13
1.82
32634--32719
19
4.5
19
81
7
84
16
13
19
50
1.79
33222--33281
21
2.8
22
76
16
72
23
40
15
21
1.91
33201--33312
42
2.7
42
79
8
120
23
35
17
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34660--34810
63
2.3
63
91
6
232
27
3
13
55
1.54
34660--34832
67
2.6
63
89
9
231
28
2
15
53
1.56
34884--34957
20
3.7
20
81
3
78
45
25
16
12
1.81
34965--35059
34
2.8
34
82
4
102
18
18
24
37
1.94
35033--35184
20
7.9
20
84
8
190
27
18
21
32
1.97
35000--35184
94
2.0
94
93
0
316
25
18
22
33
1.96
35033--35178
54
2.6
57
85
7
199
26
18
22
32
1.97
35155--35430
140
2.0
140
97
0
516
43
15
12
27
1.84
37780--37833
24
2.2
24
90
0
81
40
18
18
22
1.91
38653--38722
19
3.7
19
69
19
65
22
17
28
31
1.96
38660--38730
38
1.9
37
94
5
126
25
14
25
35
1.93

Tables:   1

The End!