genome.fa.s4690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004690.1 Hibiscus syriacus cultivar Beakdansim tig00010524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76954

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3874--3915	22	1.9	22	85	0	57	33	35	4	26	1.77
3944--4003	20	2.8	21	73	24	54	25	20	0	55	1.44
7536--7560	10	2.5	10	100	0	50	28	0	0	72	0.86
7608--7926	37	8.8	37	80	10	333	43	2	7	46	1.45
9356--9400	17	2.7	17	86	10	58	11	6	0	82	0.84
9370--9402	17	1.9	17	100	0	66	9	6	0	84	0.76
9371--9477	17	6.1	17	67	18	58	11	10	0	78	0.97
9550--9591	4	11.0	4	90	10	54	19	2	0	78	0.86
9551--9604	26	2.1	26	86	6	74	14	1	3	79	0.95
10106--10141	18	1.9	19	94	5	65	41	0	0	58	0.98
10118--10159	14	3.0	14	76	13	50	45	0	0	54	0.99
10118--10217	28	3.3	31	71	15	84	47	0	2	51	1.12
10879--10943	19	3.6	18	86	8	71	32	10	16	40	1.84
10889--10945	19	3.0	19	92	0	87	29	10	21	38	1.87
11146--11186	22	1.9	21	85	5	55	41	2	2	53	1.27
11730--11943	37	5.9	37	89	4	294	45	5	7	41	1.54
11730--11937	72	2.9	72	89	2	312	45	5	7	41	1.55
11935--12038	34	2.9	35	81	8	113	44	2	9	43	1.52
13833--13882	18	2.8	18	82	8	59	68	0	2	30	1.01
14479--14508	14	2.1	15	93	6	53	63	0	0	36	0.95
18374--18424	27	1.9	26	84	11	68	43	1	3	50	1.31
18453--18515	18	3.4	18	79	10	74	34	6	1	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18495--18531	13	2.7	14	84	15	51	37	2	0	59	1.12
19078--19131	23	2.3	23	90	6	83	35	29	12	22	1.91
19224--19277	20	2.7	20	88	0	72	59	14	12	12	1.62
21904--22049	6	24.3	6	77	2	132	6	4	42	45	1.52
21930--22067	24	5.5	24	69	13	89	7	4	42	46	1.51
22235--22571	104	3.1	112	80	8	299	33	5	28	32	1.80
22690--22956	18	15.7	18	71	16	171	41	6	7	44	1.58
22749--22798	9	5.6	9	73	17	50	40	4	6	50	1.46
22698--22883	87	2.2	87	88	3	272	41	6	6	44	1.57
22749--22886	69	2.1	64	82	10	163	42	6	6	44	1.56
22910--22962	18	2.9	18	80	5	54	47	5	9	37	1.60
23020--23054	15	2.4	15	95	4	63	54	0	5	40	1.24
23050--23141	27	3.5	25	79	8	76	42	5	7	44	1.56
24616--24686	29	2.4	29	90	0	106	43	28	7	21	1.78
24705--24750	13	3.5	13	96	0	83	15	21	47	15	1.81
24694--24728	18	1.9	18	94	0	61	14	22	45	17	1.84
24753--24801	9	5.1	9	80	9	53	38	28	18	14	1.90
24753--24807	10	5.6	10	79	10	60	36	27	20	16	1.93
31857--31927	29	2.4	29	88	4	99	45	26	8	19	1.79
31946--31991	13	3.5	13	96	0	83	15	21	47	15	1.81
31935--31969	18	1.9	18	94	0	61	14	22	45	17	1.84
31994--32069	10	7.6	10	87	10	111	35	28	21	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31994--32069	30	2.5	30	93	2	134	35	28	21	14	1.92
31994--32070	21	3.8	21	86	13	117	35	28	20	15	1.94
32897--32937	18	2.3	18	86	0	64	46	7	7	39	1.60
32916--32986	27	2.5	28	88	4	99	43	2	4	49	1.36
33008--33044	9	4.4	9	80	19	53	43	0	8	48	1.32
33099--33144	23	2.0	23	91	0	74	43	4	2	50	1.34
33142--33191	24	2.1	24	85	7	66	44	14	6	36	1.69
33164--33312	29	5.4	29	74	11	150	40	9	9	40	1.70
33186--33216	9	3.4	9	90	0	53	35	3	9	51	1.51
33162--33259	51	1.9	51	85	0	133	39	9	8	42	1.66
33345--33401	30	2.0	30	86	6	82	45	8	3	42	1.52
33455--33479	11	2.3	11	100	0	50	36	0	8	56	1.29
33466--33523	22	2.6	22	91	0	98	43	3	5	48	1.42
33575--33729	2	76.0	2	71	15	104	46	4	3	45	1.39
33552--33627	20	3.7	20	76	10	73	43	3	7	44	1.51
33575--33613	11	3.5	11	78	0	51	43	2	5	48	1.38
33577--33725	56	2.5	59	87	7	196	46	4	3	45	1.40
33985--34059	26	2.8	26	87	2	105	46	9	26	17	1.78
35744--35959	106	2.0	106	82	4	258	32	11	12	43	1.78
35772--35978	106	2.0	103	83	4	263	34	11	13	40	1.80
36435--36476	20	2.1	20	86	8	59	40	0	0	59	0.97
39189--39273	44	1.9	44	83	4	109	37	16	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39491--39540	21	2.4	21	79	0	64	52	14	6	28	1.65
42017--42707	41	17.0	41	73	5	443	35	16	17	30	1.92
42056--42697	81	7.9	80	71	10	304	35	16	17	30	1.92
42145--42698	287	1.9	283	81	4	648	36	16	17	30	1.92
42017--42659	164	4.0	162	76	9	626	35	16	17	30	1.92
42017--42709	123	5.7	122	75	7	548	35	16	17	30	1.92
43665--43690	7	3.7	7	100	0	52	61	0	0	38	0.96
43821--43856	17	2.2	16	90	5	54	83	2	0	13	0.76
43957--43983	5	5.4	5	100	0	54	81	0	0	18	0.69
44045--44087	18	2.4	18	92	0	68	72	0	6	20	1.08
64962--65090	62	2.1	61	82	8	154	64	2	6	27	1.29
65085--65180	15	6.6	14	70	20	65	75	0	6	18	1.01
65165--65197	17	1.9	17	93	0	57	84	0	6	9	0.76
65091--65199	30	3.4	31	75	12	89	75	0	7	17	1.02
66208--66249	21	2.0	21	95	0	75	35	23	7	33	1.82
67049--67084	16	2.2	17	90	5	56	41	2	2	52	1.30
68114--68167	29	2.0	29	86	13	80	51	1	5	40	1.36

Tables:   1

The End!