Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004693.1 Hibiscus syriacus cultivar Beakdansim tig00010533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2620943
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 2 of 12
Found at i:196801 original size:17 final size:17
Alignment explanation
Indices: 196758--196809 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
196748 ATTACAGTAG
*
196758 AAACTCTTTAAATTAAT
1 AAACTCTCTAAATTAAT
**
196775 --ACTCGGTAAATTAAT
1 AAACTCTCTAAATTAAT
*
196790 AAACTCTCTAAAATAAT
1 AAACTCTCTAAATTAAT
196807 AAA
1 AAA
196810 TTTGTCCGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 13 0.46
17 15 0.54
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (17 bp):
AAACTCTCTAAATTAAT
Found at i:199994 original size:31 final size:31
Alignment explanation
Indices: 199958--200016 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
199948 ATTCGAACTC
*
199958 ATTTGAATCAT-AAATCCAAGTTTAGGTACCA
1 ATTTGAA-CATAAAAGCCAAGTTTAGGTACCA
*
199989 ATTTGAACCTAAAAGCCAAGTTTAGGTA
1 ATTTGAACATAAAAGCCAAGTTTAGGTA
200017 TCTAATTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (31 bp):
ATTTGAACATAAAAGCCAAGTTTAGGTACCA
Found at i:204331 original size:3 final size:3
Alignment explanation
Indices: 204320--204359 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
204310 TTTTTTATCG
204320 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T
204360 GTTTATTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:204352 original size:22 final size:22
Alignment explanation
Indices: 204324--204367 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
204314 TTATCGTTAT
204324 TTTATTATTATTAT-TATTATTA
1 TTTATTATTATTATGT-TTATTA
204346 TTTATTATTATTATGTTTATTA
1 TTTATTATTATTATGTTTATTA
204368 ATTACATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTATTATTATTATGTTTATTA
Found at i:204465 original size:26 final size:25
Alignment explanation
Indices: 204430--204502 Score: 137
Period size: 26 Copynumber: 2.9 Consensus size: 25
204420 TCAACCCATC
204430 AGATTAGGGTTTCAAACCCTAAATT
1 AGATTAGGGTTTCAAACCCTAAATT
204455 AGATTTAGGGTTTCAAACCCTAAATT
1 AGA-TTAGGGTTTCAAACCCTAAATT
204481 AGATTAGGGTTTCAAACCCTAA
1 AGATTAGGGTTTCAAACCCTAA
204503 TCCCCTAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 22 0.47
26 25 0.53
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (25 bp):
AGATTAGGGTTTCAAACCCTAAATT
Found at i:205032 original size:17 final size:18
Alignment explanation
Indices: 205010--205049 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
205000 GAGAAAAAGG
205010 AAAAAA-AGAAAACAAAA
1 AAAAAACAGAAAACAAAA
* *
205027 AAAAAACAGAAGATAAAA
1 AAAAAACAGAAAACAAAA
205045 AAAAA
1 AAAAA
205050 GAGAGATTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.85, C:0.05, G:0.07, T:0.03
Consensus pattern (18 bp):
AAAAAACAGAAAACAAAA
Found at i:207287 original size:18 final size:20
Alignment explanation
Indices: 207264--207300 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
207254 TCAGTAATCC
207264 TATTCCC-C-GGTAATCTTT
1 TATTCCCACTGGTAATCTTT
207282 TATTCCCACTGGTAATCTT
1 TATTCCCACTGGTAATCTT
207301 ACATTCCGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 1 0.06
20 9 0.53
ACGTcount: A:0.19, C:0.27, G:0.11, T:0.43
Consensus pattern (20 bp):
TATTCCCACTGGTAATCTTT
Found at i:208012 original size:31 final size:30
Alignment explanation
Indices: 207976--208045 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
207966 TGTTATCGAG
* *
207976 TTTATATACTTT-ATAACATTGTATTGAATAT
1 TTTATATAATTTGATAA-ATT-TAGTGAATAT
*
208007 TTTATAATAATTTGATAAATTTAGTGACTAT
1 TTTAT-ATAATTTGATAAATTTAGTGAATAT
208038 TTTATATA
1 TTTATATA
208046 TTTTTTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 3 0.09
31 18 0.53
32 9 0.26
33 4 0.12
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.51
Consensus pattern (30 bp):
TTTATATAATTTGATAAATTTAGTGAATAT
Found at i:209429 original size:13 final size:14
Alignment explanation
Indices: 209401--209430 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
209391 TTAAATTTTA
209401 ATTTTTTGAAGCTT
1 ATTTTTTGAAGCTT
209415 ATTTTTTGAAG-TT
1 ATTTTTTGAAGCTT
209428 ATT
1 ATT
209431 AAACAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.23, C:0.03, G:0.13, T:0.60
Consensus pattern (14 bp):
ATTTTTTGAAGCTT
Found at i:217997 original size:2 final size:2
Alignment explanation
Indices: 217990--218023 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
217980 TTCATGGCTG
217990 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
218024 AAAGAATAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:219980 original size:23 final size:23
Alignment explanation
Indices: 219946--219994 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
219936 GAAAGATAAC
*
219946 GAACGTCCCCATATTGAATTAAA
1 GAACGTCACCATATTGAATTAAA
219969 GAACGTCACCATATTGAATTAAA
1 GAACGTCACCATATTGAATTAAA
219992 GAA
1 GAA
219995 TGGCAAGGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.24
Consensus pattern (23 bp):
GAACGTCACCATATTGAATTAAA
Found at i:221578 original size:54 final size:54
Alignment explanation
Indices: 221520--221678 Score: 158
Period size: 54 Copynumber: 2.9 Consensus size: 54
221510 TTGTTTTTGG
* * *
221520 TAATGATCCCATCAGAAGCCGAGGTTGATTCCCTTCTAGAAATTAGATTTCCAA
1 TAATGATCCCATCAGATGCAGAGGTTGATTCCCTTCTAGAAATTTGATTTCCAA
* * ** * *
221574 TAATGCTGCCA-CTAGATGCAGAATTTGATTCCCTTCTAGAAATTTGATTTACAG
1 TAATGATCCCATC-AGATGCAGAGGTTGATTCCCTTCTAGAAATTTGATTTCCAA
* * * * * * *
221628 TAACGATCCTATTAGATGCAAAGGTTGTTTCCTTTCGAGAAATTTGATTTC
1 TAATGATCCCATCAGATGCAGAGGTTGATTCCCTTCTAGAAATTTGATTTC
221679 GAGCATTCAT
Statistics
Matches: 82, Mismatches: 21, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
53 1 0.01
54 81 0.99
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (54 bp):
TAATGATCCCATCAGATGCAGAGGTTGATTCCCTTCTAGAAATTTGATTTCCAA
Found at i:221745 original size:54 final size:54
Alignment explanation
Indices: 221541--221745 Score: 177
Period size: 54 Copynumber: 3.8 Consensus size: 54
221531 TCAGAAGCCG
* * ** *
221541 AGGTTGATTCCCTTCTAGAAATTAGATTTCCAATAATGCTGCC-ACTAGATGCAGA
1 AGGTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATTAT-CCTATTAGATGCA-A
* * **
221596 A-TTTGATTCCCTTCTAGAAATTTGATTTACAGTAACGATCCTATTAGATGCAA
1 AGGTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATTATCCTATTAGATGCAA
* * * * * *
221649 AGGTTGTTTCCTTTCGAGAAATTTGATTTCGAG-CATTCATCCTATCTGAGGTG-AA
1 AGGTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATT-ATCCTAT-T-AGATGCAA
* *
221704 A-GTTGATTCCCTTCTAGAAATTCGATCTCCAGTAATTATCCT
1 AGGTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATTATCCT
221746 GTCAGAAGTA
Statistics
Matches: 120, Mismatches: 24, Indels: 13
0.76 0.15 0.08
Matches are distributed among these distances:
53 5 0.04
54 103 0.86
55 8 0.07
56 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (54 bp):
AGGTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATTATCCTATTAGATGCAA
Found at i:225937 original size:39 final size:39
Alignment explanation
Indices: 225857--225951 Score: 136
Period size: 39 Copynumber: 2.4 Consensus size: 39
225847 GTGATAACCT
* **
225857 TGGGACCACACCTCTTGGAGCTATACAAGACAATGCTCA
1 TGGGACCACACCGCTTGGAGCTATACAAGACAATGAACA
*
225896 TGGGACCACGCCGCTTGGAGCTATACAAGACAATGAACA
1 TGGGACCACACCGCTTGGAGCTATACAAGACAATGAACA
* *
225935 TGGGGCCACACCACTTG
1 TGGGACCACACCGCTTG
225952 AATTAATAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.18
Consensus pattern (39 bp):
TGGGACCACACCGCTTGGAGCTATACAAGACAATGAACA
Found at i:231131 original size:20 final size:20
Alignment explanation
Indices: 231103--231142 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
231093 TTTAATTATT
* *
231103 ATTTTATAATAATTTGGTAA
1 ATTTAATAAAAATTTGGTAA
*
231123 ATTTAATAAAAATTTTGTAA
1 ATTTAATAAAAATTTGGTAA
231143 TATTACAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (20 bp):
ATTTAATAAAAATTTGGTAA
Found at i:238386 original size:2 final size:2
Alignment explanation
Indices: 238379--238406 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
238369 ACGCTTAACA
238379 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
238407 TCGTACATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:240172 original size:35 final size:36
Alignment explanation
Indices: 240126--240304 Score: 265
Period size: 36 Copynumber: 5.0 Consensus size: 36
240116 TTTGTTCTAG
*
240126 TTGAATCGGAAGTG-CGATGCTTCTTTCCGTTCGAC
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
*
240161 TTGAATCGGAAGTG-CGATGCTTCTTTCCGTTCGA-
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
*
240195 TCTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
1 T-TGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
* * *
240232 TTAAATCGGAAGTGCCGATGCTTCCTTCCATTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
*
240268 TTAAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
240304 T
1 T
240305 AGAAACGCAG
Statistics
Matches: 136, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
34 1 0.01
35 47 0.35
36 87 0.64
37 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (36 bp):
TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAC
Found at i:243937 original size:63 final size:63
Alignment explanation
Indices: 243831--243954 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 63
243821 ACCTAAGGGA
* * * ** *
243831 ACATCTTAGGGCCTGAGAGTCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
243894 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
243955 GTCACATTAG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 2 0.04
63 49 0.96
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.18
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:247567 original size:3 final size:3
Alignment explanation
Indices: 247559--247604 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
247549 TTTTTATATA
** *
247559 TAT TAT TAT TAT CGT TA- TAT TAT TAT TAT TAC TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
247605 ATTTACAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:253611 original size:30 final size:30
Alignment explanation
Indices: 253554--253621 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
253544 ATGCATAAGT
* **
253554 AAATTCATCATTTATAATGCATCACCAATA
1 AAATGCATCATTTATAACACATCACCAATA
* *
253584 AAATGCATCATTTATAGCACATTACCAATA
1 AAATGCATCATTTATAACACATCACCAATA
*
253614 ATATGCAT
1 AAATGCAT
253622 TCGAATTTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (30 bp):
AAATGCATCATTTATAACACATCACCAATA
Found at i:260732 original size:14 final size:14
Alignment explanation
Indices: 260713--260752 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
260703 CACCTAAAAA
*
260713 AAAAAAAGGAAATG
1 AAAAAAATGAAATG
260727 AAAAAAATGAAATG
1 AAAAAAATGAAATG
260741 AAAAAAATGAAA
1 AAAAAAATGAAA
260753 AATGAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (14 bp):
AAAAAAATGAAATG
Found at i:260769 original size:14 final size:13
Alignment explanation
Indices: 260709--260768 Score: 50
Period size: 14 Copynumber: 4.5 Consensus size: 13
260699 ATTACACCTA
*
260709 AAAAAAAAAAAGG
1 AAAAAAAAAAATG
*
260722 AAATGAAAAAAATG
1 AAA-AAAAAAAATG
*
260736 AAATGAAAAAAATG
1 AAA-AAAAAAAATG
*
260750 AAAAATGAAAAA-G
1 AAAAA-AAAAAATG
260763 AAAAAA
1 AAAAAA
260769 TAAATAAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 10 0.25
14 30 0.75
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAATG
Found at i:261963 original size:47 final size:46
Alignment explanation
Indices: 261911--262060 Score: 114
Period size: 41 Copynumber: 3.3 Consensus size: 46
261901 CCAGCCGTCC
261911 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAAGAACTCT
1 TCATCACGTAGGAACCGTGTTATCACC-TTAGATGGCCAAGAACTCT
* * * ** * *
261958 TCATCACGTAAGAGCCGTGTCA--ACC-T-GATAACC-AG-TCGTCC
1 TCATCACGTAGGAACCGTGTTATCACCTTAGATGGCCAAGAAC-TCT
* * *
261999 TCATCACATAGGAACCGTGTTATCATCCCTAAAGATGGCCAAGAATTCT
1 TCATCACGTAGGAACCGTGTTATCA--CCT-TAGATGGCCAAGAACTCT
*
262048 TCATCATGTAGGA
1 TCATCACGTAGGA
262061 GCAGTGTCAT
Statistics
Matches: 74, Mismatches: 19, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
40 1 0.01
41 22 0.30
42 5 0.07
43 2 0.03
45 5 0.07
47 19 0.26
48 5 0.07
49 15 0.20
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (46 bp):
TCATCACGTAGGAACCGTGTTATCACCTTAGATGGCCAAGAACTCT
Found at i:262015 original size:88 final size:91
Alignment explanation
Indices: 261864--262069 Score: 301
Period size: 90 Copynumber: 2.3 Consensus size: 91
261854 CAGACCAGAT
* *
261864 CTCTTCATCACGTATGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGT
1 CTCTTCATCACGTAAGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACATAGGAACCGT
**
261929 GTTATCA-CCTTTAGATGGCCAAGAA
66 GTTATCACCCTAAAGATGGCCAAGAA
*
261954 CTCTTCATCACGTAAGAGCCGTGTCAACC-T-GATAACCAGTCGTCCTCATCACATAGGAACCGT
1 CTCTTCATCACGTAAGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACATAGGAACCGT
262017 GTTATCATCCCTAAAGATGGCCAAGAA
66 GTTATCA-CCCTAAAGATGGCCAAGAA
* * * *
262044 TTCTTCATCATGTAGGAGCAGTGTCA
1 CTCTTCATCACGTAAGAGCCGTGTCA
262070 TCCCCTGACC
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
88 38 0.36
89 1 0.01
90 66 0.63
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (91 bp):
CTCTTCATCACGTAAGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACATAGGAACCGT
GTTATCACCCTAAAGATGGCCAAGAA
Found at i:262316 original size:3 final size:3
Alignment explanation
Indices: 262310--262355 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
262300 TTTTTATATA
** *
262310 TAT TAT TAT TAT CGT TA- TAT TAT TAT TAT TAC TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
262356 ATTTACAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:269939 original size:29 final size:29
Alignment explanation
Indices: 269897--269955 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
269887 ATTTTCACCT
269897 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
269926 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
269955 A
1 A
269956 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:274865 original size:31 final size:31
Alignment explanation
Indices: 274830--274891 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
274820 AGGGTAAATG
*
274830 ATCCCTAACGTTATCGATATGTTCGGTTTAA
1 ATCCCTAACGTTATCGATATGTCCGGTTTAA
* * *
274861 ATCCCTAATGTTATTGGTATGTCCGGTTTAA
1 ATCCCTAACGTTATCGATATGTCCGGTTTAA
274892 GTCTCTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (31 bp):
ATCCCTAACGTTATCGATATGTCCGGTTTAA
Found at i:276670 original size:25 final size:27
Alignment explanation
Indices: 276631--276703 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
276621 ACAACTGGAT
* *
276631 ACTATTTATAAAGATGTTTA-TA-AGAA
1 ACTATTT-TAAAGATATTTATTATAAAA
276657 ACTATTTTAAAGATATTTATTATAAAA
1 ACTATTTTAAAGATATTTATTATAAAA
*
276684 ATCTAATTTAAAGATATTTA
1 A-CTATTTTAAAGATATTTA
276704 ATTTTACTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 11 0.27
26 9 0.22
27 4 0.10
28 17 0.41
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (27 bp):
ACTATTTTAAAGATATTTATTATAAAA
Found at i:276677 original size:15 final size:15
Alignment explanation
Indices: 276659--276709 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
276649 TATAAGAAAC
276659 TATTTTAAAGATATT
1 TATTTTAAAGATATT
* *
276674 TATTATAAA-A-ATC
1 TATTTTAAAGATATT
*
276687 TAATTTAAAGATATT
1 TATTTTAAAGATATT
276702 TAATTTTA
1 T-ATTTTA
276710 CTTGATTTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
13 9 0.33
14 2 0.07
15 11 0.41
16 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (15 bp):
TATTTTAAAGATATT
Found at i:304295 original size:14 final size:14
Alignment explanation
Indices: 304273--304331 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
304263 CCTTACCCCT
*
304273 AATTTTAAATCCTA
1 AATTATAAATCCTA
*
304287 AATTATAAACCCTA
1 AATTATAAATCCTA
304301 AATTAT-AATCCCATA
1 AATTATAAAT-CC-TA
* *
304316 ACTTATAAATCATA
1 AATTATAAATCCTA
304330 AA
1 AA
304332 CCTTAAACTT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
13 2 0.06
14 23 0.64
15 8 0.22
16 3 0.08
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTATAAATCCTA
Found at i:304323 original size:15 final size:14
Alignment explanation
Indices: 304269--304324 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
304259 TATACCTTAC
*
304269 CCCT-AATTTTAAA
1 CCCTAAATTATAAA
*
304282 TCCTAAATTATAAA
1 CCCTAAATTATAAA
*
304296 CCCTAAATTATAAT
1 CCCTAAATTATAAA
*
304310 CCCATAACTTATAAA
1 CCC-TAAATTATAAA
304325 TCATAAACCT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 3 0.09
14 23 0.66
15 9 0.26
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (14 bp):
CCCTAAATTATAAA
Found at i:305329 original size:21 final size:21
Alignment explanation
Indices: 305286--305329 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
305276 AACTACGTAA
* * *
305286 TTAGTACTTAAACTATCAGTT
1 TTAGTACCTAAACTATAACTT
*
305307 TTAGTACCTAAACTTTAACTT
1 TTAGTACCTAAACTATAACTT
305328 TT
1 TT
305330 TTAAAACCAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (21 bp):
TTAGTACCTAAACTATAACTT
Found at i:330269 original size:24 final size:24
Alignment explanation
Indices: 330219--330283 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
330209 AATTTTATAT
**
330219 GGCACTACGGTGC-GTTTCTACGA
1 GGCACTACGGTGCAAATTCTACGA
* *
330242 GGCACTTCGGTGCAAATTCTACGT
1 GGCACTACGGTGCAAATTCTACGA
330266 GGCACTACGGTGCAAATT
1 GGCACTACGGTGCAAATT
330284 TATACGAGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 12 0.33
24 24 0.67
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (24 bp):
GGCACTACGGTGCAAATTCTACGA
Found at i:331020 original size:22 final size:21
Alignment explanation
Indices: 330978--331021 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
330968 TACGGAAGTA
*
330978 CTGTAGCAGGGTATCGATTCC
1 CTGTAGCAGGGAATCGATTCC
*
330999 CTGTAGCAGGAGAATCGGTTCC
1 CTGTAGCAGG-GAATCGATTCC
331021 C
1 C
331022 CTATTATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (21 bp):
CTGTAGCAGGGAATCGATTCC
Found at i:331106 original size:21 final size:19
Alignment explanation
Indices: 331079--331129 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 19
331069 CTGTTCACGG
*
331079 TACTGTTCATACGGTATTGT
1 TACTGTTCATACCGTATT-T
331099 TCACTGTTCATACCGTATTT
1 T-ACTGTTCATACCGTATTT
*
331119 TATTGTTCATA
1 TACTGTTCATA
331130 AAACATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 9 0.32
20 3 0.11
21 16 0.57
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.47
Consensus pattern (19 bp):
TACTGTTCATACCGTATTT
Found at i:331358 original size:21 final size:21
Alignment explanation
Indices: 331332--331381 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
331322 TCAGGACAGG
331332 GAGTATC-AGTACTCTTTTAAT
1 GAGTATCGA-TACTCTTTTAAT
*
331353 GAGTATCGATAGTCTTTTAAT
1 GAGTATCGATACTCTTTTAAT
331374 GAGTATCG
1 GAGTATCG
331382 GTATTACCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (21 bp):
GAGTATCGATACTCTTTTAAT
Found at i:332148 original size:16 final size:16
Alignment explanation
Indices: 332124--332154 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
332114 TATATATAAA
332124 AGATAGAGTCAATTTT
1 AGATAGAGTCAATTTT
*
332140 AGATCGAGTCAATTT
1 AGATAGAGTCAATTT
332155 AAATTTCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (16 bp):
AGATAGAGTCAATTTT
Found at i:332263 original size:21 final size:24
Alignment explanation
Indices: 332215--332263 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
332205 ATTTGGGGTA
332215 AAAATATATTATATTTACTGTGAGAT
1 AAAATATATTATATTTAC--TGAGAT
332241 AAAATATATT-TATTTA-TGA-AT
1 AAAATATATTATATTTACTGAGAT
332262 AA
1 AA
332264 TAATTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.17
22 3 0.13
25 6 0.26
26 10 0.43
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (24 bp):
AAAATATATTATATTTACTGAGAT
Found at i:332725 original size:20 final size:21
Alignment explanation
Indices: 332700--332751 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
332690 TTTTCCCAAT
*
332700 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
332720 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
332741 TCGCAATGCGA
1 TCGCAATGCGA
332752 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:332765 original size:20 final size:20
Alignment explanation
Indices: 332740--332847 Score: 110
Period size: 20 Copynumber: 5.3 Consensus size: 20
332730 AATTGGGAAA
332740 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
332760 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
332780 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
332801 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
332821 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
*
332841 TTCGCAA
1 ATCGCAA
332848 CGCGGTTTAC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
19 2 0.03
20 58 0.77
21 13 0.17
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:332784 original size:61 final size:61
Alignment explanation
Indices: 332737--332851 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 61
332727 GCGAATTGGG
* * * * *
332737 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
332798 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCG
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCG
332852 GTTTACATAG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:333430 original size:19 final size:19
Alignment explanation
Indices: 333370--333450 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
333360 TTCGAGAATG
333370 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
** *
333390 ACTATCGCAA--CGAGAT-
1 AAAATCGCAACGCGAAATA
333406 --AATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
333423 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
333442 AAAATCGCA
1 AAAATCGCA
333451 TTGCGATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
14 7 0.14
16 5 0.10
17 4 0.08
18 1 0.02
19 24 0.49
20 8 0.16
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:333468 original size:19 final size:19
Alignment explanation
Indices: 333446--333630 Score: 174
Period size: 19 Copynumber: 10.1 Consensus size: 19
333436 GAAACCAAAA
*
333446 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
333465 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
333484 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
333503 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
333523 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
333539 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
333556 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
333570 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
333589 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
333609 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
333629 TC
1 TC
333631 AACCAAAAGA
Statistics
Matches: 138, Mismatches: 15, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
14 20 0.14
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 60 0.43
20 49 0.36
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:333523 original size:39 final size:38
Alignment explanation
Indices: 333446--333630 Score: 174
Period size: 33 Copynumber: 5.1 Consensus size: 38
333436 GAAACCAAAA
*
333446 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
*
333484 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GTTGCGATTTTCATT
* * **
333523 TCGCGTTGCGATTGTC---T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* **
333556 TCGCGTTGCGA--TTC---TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* *
333589 TCCGCGTTGCGATTCTCATTATCTCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
333629 TC
1 TC
333631 AACCAAAAGA
Statistics
Matches: 124, Mismatches: 13, Indels: 19
0.79 0.08 0.12
Matches are distributed among these distances:
31 3 0.02
33 38 0.31
34 10 0.08
35 1 0.01
36 3 0.02
38 21 0.17
39 30 0.24
40 18 0.15
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:333607 original size:20 final size:20
Alignment explanation
Indices: 333573--333630 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
333563 GCGATTCTCT
**
333573 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
333593 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
333613 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
333631 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:335674 original size:42 final size:42
Alignment explanation
Indices: 335614--335736 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
335604 GCCCGACTCG
* * *
335614 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
335656 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
335698 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
335737 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:335694 original size:21 final size:21
Alignment explanation
Indices: 335670--335736 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
335660 TCATTCCTCG
335670 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
335691 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
335712 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
335733 AGAG
1 AGAG
335737 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:337115 original size:14 final size:14
Alignment explanation
Indices: 337096--337131 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
337086 ATTGTTTAAT
337096 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
337110 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
337124 TGATTTGT
1 TGATTTGT
337132 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:337357 original size:33 final size:32
Alignment explanation
Indices: 337315--337440 Score: 173
Period size: 33 Copynumber: 3.8 Consensus size: 32
337305 TTAAATTCGA
337315 GTTGCGATTTTCATTTCGCATTGCGATTCCCTC
1 GTTGCGATTTTCATTTCGCATTGCGATT-CCTC
**
337348 GTTGCGATTTTCATTTCGCATTGCGAAATT-AGC
1 GTTGCGATTTTCATTTCGCATTGCG--ATTCCTC
337381 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTC-CTC
* *
337414 GTTGTGATTTTCATTTCACATTGCGAT
1 GTTGCGATTTTCATTTCGCATTGCGAT
337441 AGTAATTTCC
Statistics
Matches: 83, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
31 3 0.04
33 77 0.93
35 3 0.04
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (32 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCCTC
Found at i:337373 original size:19 final size:19
Alignment explanation
Indices: 337316--337440 Score: 73
Period size: 19 Copynumber: 7.4 Consensus size: 19
337306 TAAATTCGAG
337316 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
**
337335 TTGCGA--TTC-CCTCG--
1 TTGCGATTTTCATTTCGCA
337349 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
* * *
337368 TTGCGA-----AATTAGCG
1 TTGCGATTTTCATTTCGCA
337382 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
337401 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
* *
337415 TTGTGATTTTCATTTCACA
1 TTGCGATTTTCATTTCGCA
337434 TTGCGAT
1 TTGCGAT
337441 AGTAATTTCC
Statistics
Matches: 76, Mismatches: 15, Indels: 30
0.63 0.12 0.25
Matches are distributed among these distances:
14 22 0.29
16 13 0.17
17 12 0.16
19 29 0.38
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:337403 original size:66 final size:66
Alignment explanation
Indices: 337315--337439 Score: 223
Period size: 66 Copynumber: 1.9 Consensus size: 66
337305 TTAAATTCGA
*
337315 GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGAAATTAG
1 GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCACATTGCGAAATTAG
337380 C
66 C
* *
337381 GTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGTGATTTTCATTTCACATTGCGA
1 GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCACATTGCGA
337440 TAGTAATTTC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (66 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCACATTGCGAAATTAG
C
Found at i:339749 original size:12 final size:12
Alignment explanation
Indices: 339732--339756 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
339722 TCTTCGGGGA
339732 CTTTTTCTTCTT
1 CTTTTTCTTCTT
339744 CTTTTTCTTCTT
1 CTTTTTCTTCTT
339756 C
1 C
339757 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:339965 original size:24 final size:24
Alignment explanation
Indices: 339931--339984 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
339921 CTGAAACATC
* *
339931 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
339955 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
339979 ATCAAA
1 ATCAAA
339985 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:340953 original size:20 final size:20
Alignment explanation
Indices: 340928--340985 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
340918 AATTATTTGA
*
340928 CTATCGCAAGGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
340948 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
340968 TTATCGCAACGCAAAAAT
1 CTATCGCAACGCGAAAAT
340986 CGCAATGTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:341174 original size:14 final size:14
Alignment explanation
Indices: 341155--341191 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
341145 CATCAATTAA
341155 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
341169 ACAAATCATCTTTT
1 ACAAATCAACATTT
341183 ACAAATCAA
1 ACAAATCAA
341192 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:343120 original size:14 final size:14
Alignment explanation
Indices: 343101--343158 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
343091 TTTCATTTCG
343101 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
343115 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
343131 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
343147 CGTTGCGATTTT
1 CGTTGCGATTTT
343159 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:343132 original size:32 final size:33
Alignment explanation
Indices: 343082--343174 Score: 170
Period size: 32 Copynumber: 2.8 Consensus size: 33
343072 ATGACTATCG
*
343082 CGTTGCGATTTTCATTTCGCGTTGCGATTTTGT
1 CGTTGCGATTTTCATTTCGCATTGCGATTTTGT
343115 CGTTGCGA-TTTCATTTCGCATTGCGATTTTGT
1 CGTTGCGATTTTCATTTCGCATTGCGATTTTGT
343147 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
343175 AGCCATTTCC
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.53
33 27 0.47
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTTTGT
Found at i:343193 original size:20 final size:19
Alignment explanation
Indices: 343159--343213 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
343149 TTGCGATTTT
*
343159 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
343178 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
343198 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
343214 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:343721 original size:18 final size:18
Alignment explanation
Indices: 343695--343739 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
343685 GTCGATCAGA
*
343695 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
343713 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
343731 TGATGGCTC
1 TGATGGCTC
343740 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:345084 original size:20 final size:20
Alignment explanation
Indices: 345059--345096 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
345049 AATAGTTTCT
345059 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
345079 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
345097 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:345145 original size:19 final size:19
Alignment explanation
Indices: 345123--345173 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
345113 GAAACTAAAA
345123 TCGCGTTGCGATTTGCATT
1 TCGCGTTGCGATTTGCATT
345142 TCGCGTTGCGATTTGCATT
1 TCGCGTTGCGATTTGCATT
*
345161 TTGCGTTGCGATT
1 TCGCGTTGCGATT
345174 CTTGGTTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.10, C:0.20, G:0.27, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTGCATT
Found at i:345407 original size:22 final size:22
Alignment explanation
Indices: 345380--345423 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
345370 GATGGAGATA
345380 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
345402 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
345424 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:345636 original size:20 final size:20
Alignment explanation
Indices: 345611--345663 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
345601 GATTATATAT
*
345611 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTAAG
345631 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTAAG
*
345651 TATCTCGTTGCGA
1 TATCGCGTTGCGA
345664 TTTTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTAAG
Found at i:345718 original size:20 final size:20
Alignment explanation
Indices: 345674--345766 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
345664 TTTTTTATTA
* **
345674 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
345695 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
345715 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
* *
345736 TCGCGTTGTGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
345756 TCGCATTGCGA
1 TCGCATTGCGA
345767 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:345719 original size:41 final size:41
Alignment explanation
Indices: 345656--345766 Score: 179
Period size: 41 Copynumber: 2.7 Consensus size: 41
345646 GTAAGTATCT
*
345656 CGTTGCGATTT-TTTATTATCGCATTGCGATTTTCCCAATTCG
1 CGTTGCGATTTACTTA-T-TCGCATTGCGATTTTCCCAATTCG
345698 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
1 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
*
345739 CGTTGTGATTTACTTATTCGCATTGCGA
1 CGTTGCGATTTACTTATTCGCATTGCGA
345767 ATTGGGAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
41 51 0.77
42 12 0.18
43 3 0.05
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (41 bp):
CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
Found at i:346548 original size:24 final size:24
Alignment explanation
Indices: 346498--346562 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
346488 AATTTTATAT
**
346498 GGCACTACGGTGC-GTTTCTACGA
1 GGCACTACGGTGCAAATTCTACGA
* *
346521 GGCACTTCGGTGCAAATTCTACGT
1 GGCACTACGGTGCAAATTCTACGA
346545 GGCACTACGGTGCAAATT
1 GGCACTACGGTGCAAATT
346563 TATACGAGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 12 0.33
24 24 0.67
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (24 bp):
GGCACTACGGTGCAAATTCTACGA
Found at i:347299 original size:22 final size:21
Alignment explanation
Indices: 347257--347300 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
347247 TACGGAAGTA
*
347257 CTGTAGCAGGGTATCGATTCC
1 CTGTAGCAGGGAATCGATTCC
*
347278 CTGTAGCAGGAGAATCGGTTCC
1 CTGTAGCAGG-GAATCGATTCC
347300 C
1 C
347301 CTATTATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (21 bp):
CTGTAGCAGGGAATCGATTCC
Found at i:347385 original size:21 final size:19
Alignment explanation
Indices: 347358--347408 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 19
347348 CTGTTCACGG
*
347358 TACTGTTCATACGGTATTGT
1 TACTGTTCATACCGTATT-T
347378 TCACTGTTCATACCGTATTT
1 T-ACTGTTCATACCGTATTT
*
347398 TATTGTTCATA
1 TACTGTTCATA
347409 AAACATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 9 0.32
20 3 0.11
21 16 0.57
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.47
Consensus pattern (19 bp):
TACTGTTCATACCGTATTT
Found at i:347637 original size:21 final size:21
Alignment explanation
Indices: 347611--347660 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
347601 TCAGGACAGG
347611 GAGTATC-AGTACTCTTTTAAT
1 GAGTATCGA-TACTCTTTTAAT
*
347632 GAGTATCGATAGTCTTTTAAT
1 GAGTATCGATACTCTTTTAAT
347653 GAGTATCG
1 GAGTATCG
347661 GTATTACCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (21 bp):
GAGTATCGATACTCTTTTAAT
Found at i:348427 original size:16 final size:16
Alignment explanation
Indices: 348403--348433 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
348393 TATATATAAA
348403 AGATAGAGTCAATTTT
1 AGATAGAGTCAATTTT
*
348419 AGATCGAGTCAATTT
1 AGATAGAGTCAATTT
348434 AAATTTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (16 bp):
AGATAGAGTCAATTTT
Found at i:348542 original size:21 final size:24
Alignment explanation
Indices: 348494--348542 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
348484 ATTTGGGGTA
348494 AAAATATATTATATTTACTGTGAGAT
1 AAAATATATTATATTTAC--TGAGAT
348520 AAAATATATT-TATTTA-TGA-AT
1 AAAATATATTATATTTACTGAGAT
348541 AA
1 AA
348543 TAATTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.17
22 3 0.13
25 6 0.26
26 10 0.43
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (24 bp):
AAAATATATTATATTTACTGAGAT
Found at i:349538 original size:21 final size:21
Alignment explanation
Indices: 349456--349528 Score: 128
Period size: 21 Copynumber: 3.5 Consensus size: 21
349446 ACCATTACGA
*
349456 TGCTGACATGTCAATCCATTG
1 TGCTGACATGTCAGTCCATTG
349477 TGCTGACATGTCAGTCCATTG
1 TGCTGACATGTCAGTCCATTG
349498 TGCTGACATGTCAGTCCATTG
1 TGCTGACATGTCAGTCCATTG
*
349519 TGCTAACATG
1 TGCTGACATG
349529 ACACTTCATT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (21 bp):
TGCTGACATGTCAGTCCATTG
Found at i:354623 original size:34 final size:34
Alignment explanation
Indices: 354580--354648 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
354570 TTCTACTATT
354580 GCTGCTTGTATGTAATATTGATAACCAAGTTTCA
1 GCTGCTTGTATGTAATATTGATAACCAAGTTTCA
354614 GCTGCTTGTATGTAATATTGATAACCAAGTTTCA
1 GCTGCTTGTATGTAATATTGATAACCAAGTTTCA
354648 G
1 G
354649 TTAAGCGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (34 bp):
GCTGCTTGTATGTAATATTGATAACCAAGTTTCA
Found at i:359896 original size:5 final size:5
Alignment explanation
Indices: 359886--359910 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
359876 GTGTGAGTTG
359886 TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT
359911 AGACCATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:360216 original size:25 final size:24
Alignment explanation
Indices: 360172--360253 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
360162 GTATTTTCAA
* *
360172 TTATTATT-ATATAATTTATTTAT
1 TTATTATTAACATTATTTATTTAT
360195 TT-TTATATAACTATT-TTCTATTTAAT
1 TTATTAT-TAAC-ATTATT-TATTT-AT
360221 TTATTATTAACATTATTTATTTAT
1 TTATTATTAACATTATTTATTTAT
360245 TTATT-TTAA
1 TTATTATTAA
360254 TTGATAATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
22 4 0.08
23 7 0.14
24 10 0.20
25 15 0.30
26 10 0.20
27 4 0.08
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (24 bp):
TTATTATTAACATTATTTATTTAT
Found at i:360556 original size:7 final size:7
Alignment explanation
Indices: 360546--360582 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
360536 TTTTATTTTT
360546 ATAAAAA
1 ATAAAAA
*
360553 ATAATAA
1 ATAAAAA
*
360560 ACAAAAA
1 ATAAAAA
360567 ATAAAAA
1 ATAAAAA
360574 ATAAAAA
1 ATAAAAA
360581 AT
1 AT
360583 TTATTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (7 bp):
ATAAAAA
Found at i:362088 original size:29 final size:29
Alignment explanation
Indices: 362003--362090 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
361993 ACCCAACCAT
* ****
362003 AGGTCGCCATGCACTCCCAGCGACCTCCT
1 AGGTCGCCATGCACTCCCGGCGACCAAGG
*
362032 AGGTCGCCATGCACGCCCGGCGACCAAGG
1 AGGTCGCCATGCACTCCCGGCGACCAAGG
*
362061 AGGTCGCCATGCACTCGCGGCGACCAAGG
1 AGGTCGCCATGCACTCCCGGCGACCAAGG
362090 A
1 A
362091 TTCATGCATG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.20, C:0.39, G:0.30, T:0.11
Consensus pattern (29 bp):
AGGTCGCCATGCACTCCCGGCGACCAAGG
Found at i:362281 original size:29 final size:29
Alignment explanation
Indices: 362242--362321 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 29
362232 AGGGGATGTT
* **
362242 GCCGCGAGTGCATGGCGACCTCA-TTGGTC
1 GCCGGGAGTGCATGGCGACCT-AGGAGGTC
*
362271 GCCGGGCGTGCATGGCGACCTAGGAGGTC
1 GCCGGGAGTGCATGGCGACCTAGGAGGTC
*
362300 GCTGGGAGTGCATGGCGACCTA
1 GCCGGGAGTGCATGGCGACCTA
362322 TGGTTGGGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
28 1 0.02
29 43 0.98
ACGTcount: A:0.15, C:0.28, G:0.40, T:0.17
Consensus pattern (29 bp):
GCCGGGAGTGCATGGCGACCTAGGAGGTC
Found at i:367342 original size:2 final size:2
Alignment explanation
Indices: 367335--367359 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
367325 TTCATCTGGG
367335 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
367360 TTGCAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:369714 original size:32 final size:32
Alignment explanation
Indices: 369673--369736 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
369663 TGTATACAGA
369673 GGCCACTGATGGCTCCTCTATTGAAACCAAGG
1 GGCCACTGATGGCTCCTCTATTGAAACCAAGG
369705 GGCCACTGATGGCTCCTCTATTGAAACCAAGG
1 GGCCACTGATGGCTCCTCTATTGAAACCAAGG
369737 AGAGTGCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (32 bp):
GGCCACTGATGGCTCCTCTATTGAAACCAAGG
Found at i:374031 original size:43 final size:43
Alignment explanation
Indices: 373965--374050 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
373955 CGGCCCTACC
*
373965 CATATCTATGAGTTATGGAGGCATTGGGCAGATACAGAAGTGT
1 CATAGCTATGAGTTATGGAGGCATTGGGCAGATACAGAAGTGT
*
374008 CATAGCTATGAGTTATGGAGGCATTGGGCAGATACAGAGGTGT
1 CATAGCTATGAGTTATGGAGGCATTGGGCAGATACAGAAGTGT
374051 TGTTTCACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.27
Consensus pattern (43 bp):
CATAGCTATGAGTTATGGAGGCATTGGGCAGATACAGAAGTGT
Found at i:374107 original size:31 final size:31
Alignment explanation
Indices: 374070--374137 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
374060 CTTTGAGTGC
** *
374070 TAAATTATTTGTTTCGATCTGTTTTAATGTT
1 TAAATTATTAATTTCGATCTGTTTTAATATT
* * *
374101 TAAATTATTAATTTTGATTTGTTTTAGTATT
1 TAAATTATTAATTTCGATCTGTTTTAATATT
374132 TAAATT
1 TAAATT
374138 GAAAAAATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (31 bp):
TAAATTATTAATTTCGATCTGTTTTAATATT
Found at i:379239 original size:32 final size:33
Alignment explanation
Indices: 379193--379265 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
379183 TTTGGGTCGA
* *
379193 GTCGAGTTGGG-TTTTTTAAATGTTATGTTCTG
1 GTCGGGTTGGGTTTTTTTAAATGTTATGTTCGG
379225 GTCGGGTTGGGTTTTTTTAAATGTTATGTTCGG
1 GTCGGGTTGGGTTTTTTTAAATGTTATGTTCGG
379258 GTCGGGTT
1 GTCGGGTT
379266 CGGGGTTAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 10 0.26
33 28 0.74
ACGTcount: A:0.12, C:0.07, G:0.33, T:0.48
Consensus pattern (33 bp):
GTCGGGTTGGGTTTTTTTAAATGTTATGTTCGG
Found at i:380300 original size:46 final size:46
Alignment explanation
Indices: 380233--380326 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
380223 CACAATTAGG
* * *
380233 AGATGAAATATAATGTTTAAAAGTTAGAGGGTTGCTTTAGAATAAT
1 AGATGAAATATAATGTTTAAAAGTTAGACGGCTACTTTAGAATAAT
*
380279 AGATGAAATATAATGTTTAAAAGTTCGACGGCTACTTTAGAATAAT
1 AGATGAAATATAATGTTTAAAAGTTAGACGGCTACTTTAGAATAAT
380325 AG
1 AG
380327 TCATAGTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.33
Consensus pattern (46 bp):
AGATGAAATATAATGTTTAAAAGTTAGACGGCTACTTTAGAATAAT
Found at i:381245 original size:10 final size:10
Alignment explanation
Indices: 381206--381236 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
381196 AAAACAAAAA
*
381206 TCCCGGTTTT
1 TCCCGATTTT
381216 TCCCGATTTT
1 TCCCGATTTT
381226 TCCCGATTTT
1 TCCCGATTTT
381236 T
1 T
381237 TCCGGTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.06, C:0.29, G:0.13, T:0.52
Consensus pattern (10 bp):
TCCCGATTTT
Found at i:383233 original size:60 final size:60
Alignment explanation
Indices: 383081--383243 Score: 209
Period size: 60 Copynumber: 2.7 Consensus size: 60
383071 ATAGCCGAGT
* * * *
383081 GACCATTTTGTAACTTTTAATAGTCGAGTGACTCAACAAAACAACAACCTATAATCAAAG
1 GACCATTTTGTAACTTTTAATAGTCGAGGGACTCAATAAAGCAACAACCTATAATCAAAA
* * * * *
383141 GACCATTTTGTAACTTTTAATAGTCGATGGACTTAATAAAGTAACAATCTATAGTCAAAA
1 GACCATTTTGTAACTTTTAATAGTCGAGGGACTCAATAAAGCAACAACCTATAATCAAAA
** **
383201 GACCATTTTGTAACTTTTAATTTTTAAGGGACTCAATAAAGCA
1 GACCATTTTGTAACTTTTAATAGTCGAGGGACTCAATAAAGCA
383244 TTATTATACG
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 87 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (60 bp):
GACCATTTTGTAACTTTTAATAGTCGAGGGACTCAATAAAGCAACAACCTATAATCAAAA
Found at i:386949 original size:31 final size:33
Alignment explanation
Indices: 386907--386981 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 33
386897 ATAATTCTAA
* * *
386907 ATAAATAATAATTATATAAAT-ATTATTTTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
* *
386939 A-AAAAAATAA-TATTTACATAAATATATTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
386970 ATAAAAAATAAT
1 ATAAAAAATAAT
386982 AACTATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 7 0.20
31 18 0.51
32 10 0.29
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
ATAAAAAATAATTATATAAATAAATATATTAAT
Found at i:386960 original size:34 final size:31
Alignment explanation
Indices: 386904--386983 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 31
386894 TTAATAATTC
* *
386904 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTACATAAATA-TA--TTAA
*
386938 TAAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAAATAATAATTACATAAATATATTAA
386969 TATAAAAAATAATAA
1 TA-AAAAAATAATAA
386984 CTATTTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 6 0.15
32 11 0.27
33 2 0.05
34 22 0.54
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (31 bp):
TAAAAAAATAATAATTACATAAATATATTAA
Found at i:388082 original size:29 final size:29
Alignment explanation
Indices: 388047--388113 Score: 125
Period size: 29 Copynumber: 2.3 Consensus size: 29
388037 GAACATAATA
388047 AATAGTCAAATGACTATTTTATAACTTTT
1 AATAGTCAAATGACTATTTTATAACTTTT
*
388076 AATAGTCATATGACTATTTTATAACTTTT
1 AATAGTCAAATGACTATTTTATAACTTTT
388105 AATAGTCAA
1 AATAGTCAA
388114 GAGACTCAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.43
Consensus pattern (29 bp):
AATAGTCAAATGACTATTTTATAACTTTT
Found at i:388263 original size:59 final size:59
Alignment explanation
Indices: 388152--388263 Score: 181
Period size: 59 Copynumber: 1.9 Consensus size: 59
388142 TTAGAACATC
*
388152 ATTTTGTAACTTTTAATAGTCAGAAAATTTAATAAAATAATATTATATAGTCAAGAATT
1 ATTTTGTAACTTTTAATAGTCAGAAAATTTAATAAAATAATATTATACAGTCAAGAATT
* *
388211 ATTTTGTAACTTTTAATAGTC-GAAAAATTTAATAAAATAATTTTCTACAGTCA
1 ATTTTGTAACTTTTAATAGTCAG-AAAATTTAATAAAATAATATTATACAGTCA
388264 GTGACCATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
58 1 0.02
59 48 0.98
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (59 bp):
ATTTTGTAACTTTTAATAGTCAGAAAATTTAATAAAATAATATTATACAGTCAAGAATT
Found at i:402948 original size:15 final size:15
Alignment explanation
Indices: 402923--402957 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
402913 GGACGCGACC
*
402923 ACGACCCGAGCCGAG
1 ACGAGCCGAGCCGAG
*
402938 CCGAGCCGAGCCGAG
1 ACGAGCCGAGCCGAG
402953 ACGAG
1 ACGAG
402958 ACGGACGGCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.37, G:0.37, T:0.00
Consensus pattern (15 bp):
ACGAGCCGAGCCGAG
Found at i:402960 original size:5 final size:5
Alignment explanation
Indices: 402928--402957 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
402918 CGACCACGAC
*
402928 CCGAG CCGAG CCGAG CCGAG CCGAG ACGAG
1 CCGAG CCGAG CCGAG CCGAG CCGAG CCGAG
402958 ACGGACGGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.37, G:0.40, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:410041 original size:27 final size:27
Alignment explanation
Indices: 409983--410041 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
409973 AGATCGAATA
* **
409983 AAAAATTATCAAATATTAAATTAGGTT
1 AAAAATTATAAAATATTAAATTAAATT
* *
410010 AAAAATTTTAAAATTTTAAATTAAATT
1 AAAAATTATAAAATATTAAATTAAATT
*
410037 TAAAA
1 AAAAA
410042 GTAAATTATG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (27 bp):
AAAAATTATAAAATATTAAATTAAATT
Found at i:422628 original size:60 final size:61
Alignment explanation
Indices: 422451--422638 Score: 211
Period size: 60 Copynumber: 3.1 Consensus size: 61
422441 TCATCATATG
* * * *
422451 TCCCCAAACTATGATTCTCATTTTAAATTAGTCTTTAAACTTTTA-AACATTTCAATTTTA
1 TCCCCAAACTATGAATCTCATTCTAAATTAGTCCTTAAACTTTTAGAACATTCCAATTTTA
* * * * * * *
422511 TCCTCAAACTATGACTCTCATCCTAAATTAGTACTTAAACTTGT-GAACATTCTAATTTCA
1 TCCCCAAACTATGAATCTCATTCTAAATTAGTCCTTAAACTTTTAGAACATTCCAATTTTA
* * * *
422571 TCCCCAAACTATGAATCACATTCTAAATTGGTCCCTAAACTTTTAGATC-TTCCAATTTTA
1 TCCCCAAACTATGAATCTCATTCTAAATTAGTCCTTAAACTTTTAGAACATTCCAATTTTA
*
422631 TACCCAAA
1 TCCCCAAA
422639 TTCATCCAAA
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
60 101 0.97
61 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (61 bp):
TCCCCAAACTATGAATCTCATTCTAAATTAGTCCTTAAACTTTTAGAACATTCCAATTTTA
Found at i:425970 original size:59 final size:60
Alignment explanation
Indices: 425849--425979 Score: 135
Period size: 59 Copynumber: 2.2 Consensus size: 60
425839 GTGGTGACTG
* * *
425849 TTTTGTAACTTTTAATAGTCGAGAGACTTAACAAAACAACATTCTATAGTCAGAAGATCA
1 TTTTGTAACTTTTAATAGTCGAGAGACTTAACAAAACAACATCCTATAGTAAGAAGACCA
* * * * *
425909 TTTTGTAATTTTTAATAGTCGA-TGACTTAATAAAACAATA-CCATATAATTAAG-AGACCA
1 TTTTGTAACTTTTAATAGTCGAGAGACTTAACAAAACAACATCC-TAT-AGTAAGAAGACCA
425968 TTTATGT-ACTTT
1 TTT-TGTAACTTT
425980 ACCCAATACT
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
58 1 0.02
59 30 0.51
60 28 0.47
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (60 bp):
TTTTGTAACTTTTAATAGTCGAGAGACTTAACAAAACAACATCCTATAGTAAGAAGACCA
Found at i:427678 original size:17 final size:17
Alignment explanation
Indices: 427656--427690 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
427646 AGGGAAACAG
427656 GTTTATTTTTCTGTTTT
1 GTTTATTTTTCTGTTTT
427673 GTTTATTTTTCTGTTTT
1 GTTTATTTTTCTGTTTT
427690 G
1 G
427691 AATCTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.06, G:0.14, T:0.74
Consensus pattern (17 bp):
GTTTATTTTTCTGTTTT
Found at i:431567 original size:29 final size:29
Alignment explanation
Indices: 431535--431601 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
431525 GAACATAATG
431535 AATATTCAAGTA-ATCATTTTATAATTTTT
1 AATATTCAAG-AGATCATTTTATAATTTTT
* *
431564 AATAGTT-GAGAGATTATTTTATAATTTTT
1 AATA-TTCAAGAGATCATTTTATAATTTTT
*
431593 AATAGTCAA
1 AATATTCAA
431602 TGGACTCAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
28 2 0.06
29 27 0.87
30 2 0.06
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (29 bp):
AATATTCAAGAGATCATTTTATAATTTTT
Found at i:432247 original size:15 final size:15
Alignment explanation
Indices: 432227--432296 Score: 63
Period size: 15 Copynumber: 4.6 Consensus size: 15
432217 CATAGGTAAA
432227 AATATAATAATCGAT
1 AATATAATAATCGAT
*
432242 AATATAATTAATC-AA
1 AATATAA-TAATCGAT
* *
432257 AATTTAATGAATCGGT
1 AATATAAT-AATCGAT
*
432273 AATATAAATAA-CTAT
1 AATAT-AATAATCGAT
432288 AATATAATA
1 AATATAATA
432297 TTTTTAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
14 5 0.11
15 25 0.57
16 11 0.25
17 3 0.07
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (15 bp):
AATATAATAATCGAT
Found at i:437189 original size:122 final size:121
Alignment explanation
Indices: 436864--437562 Score: 644
Period size: 122 Copynumber: 5.8 Consensus size: 121
436854 AAACTATCCG
** * * * *
436864 TTTTAGTACCATGCCGTTAAAAACTAAACACATTTAGTACCTAAATTATCAGTTTTGGTATGTTT
1 TTTTAGTACCATGATGTTAAAAACTTAACGC-GTTAGTACCTAAACTATCAGTTTTGGTATGTTT
* ***** * * * *
436929 TAGTACCTAAACTTTAAAAAAAAAATCAAAAACTCACCTAACGTTCAATTTTCATTTCA
65 TAGTACCTAAACTTT--TAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
* * * * **
436988 TTTTAGTATCATGCTGTTAAAAACTTAA----TTAGTACCTAAACTACCAGTTTTGATCCGTTTT
1 TTTTAGTACCATGATGTTAAAAACTTAACGCGTTAGTACCTAAACTATCAGTTTTGGTATGTTTT
437049 AGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
66 AGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
* * * * ** *
437105 TTTTAGTAACTTGATGTAAAAAACTTAACGCGCTTAGTACATAATTTATTAGTTTTGGTATGTTT
1 TTTTAGTACCATGATGTTAAAAACTTAACGCG-TTAGTACCTAAACTATCAGTTTTGGTATGTTT
* * *
437170 TAGTACCTAAATTTTTAATTTTTTCAAAAACTTACCTAACTTTTAGTTTTCATTTAA
65 TAGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
** * * * **
437227 TTTTAGTACCATG-TCGTTAAAAACTTAACATGATAAATACCTAAACTATCAGTTTTGATCCGTT
1 TTTTAGTACCATGAT-GTTAAAAACTTAACGCG-TTAGTACCTAAACTATCAGTTTTGGTATGTT
* * *
437291 TTAGTACCTAAACTTATATTTTTTTCAAAAACTTACCTAACATTTGGTTTTCATTTCA
64 TTAGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
* * * * * *
437349 TTTTAGTACCCCA-CAT-TTAAAAATTTAACGCGTTTAGTGCGTAAACTATCAGTTTCGGTATGC
1 TTTTAGTA--CCATGATGTTAAAAACTTAACGCG-TTAGTACCTAAACTATCAGTTTTGGTATGT
* * * **
437412 TTTAGTGCCTAAACTTTCAATTTTTTAAAAAACTTACCTAATGTTTAGTTTTCATTTCA
63 TTTAGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
* * * * * * ***
437471 TTTTAGTACCCT-ATCGTTAAAAACTT-ATGCGTTTAGTTCCTAAATTATCAATTTTCGTCCATT
1 TTTTAGTACCATGAT-GTTAAAAACTTAACGCG-TTAGTACCTAAACTATCAGTTTTGGTATGTT
* * *
437534 TTAGTAACTCAACTTTCAA-TTTTTCAAAA
64 TTAGTACCTAAACTTTTAATTTTTTCAAAA
437563 CTCAACGTTA
Statistics
Matches: 470, Mismatches: 93, Indels: 28
0.80 0.16 0.05
Matches are distributed among these distances:
117 56 0.12
119 42 0.09
120 13 0.03
121 43 0.09
122 287 0.61
124 29 0.06
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (121 bp):
TTTTAGTACCATGATGTTAAAAACTTAACGCGTTAGTACCTAAACTATCAGTTTTGGTATGTTTT
AGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACATTTAGTTTTCATTTCA
Found at i:437316 original size:244 final size:240
Alignment explanation
Indices: 436897--437497 Score: 742
Period size: 244 Copynumber: 2.5 Consensus size: 240
436887 CTAAACACAT
* * *****
436897 TTAGTACCTAAATTATCAGTTTTGGTATGTTTTAGTACCTAAACTTTAAAAAAAAAATCAAAAAC
1 TTAGTACATAAATTATCAGTTTTGGTATGTTTTAGTACCTAAA-TTT-TAAATTTTTTCAAAAAC
* * * * * *
436962 TCACCTAACGTTCAATTTTCATTTCATTTTAGTATCATG-CTGTTAAAAACTT-AATTAGTACCT
64 TTACCTAACTTTTAGTTTTCATTTCATTTTAGTACCATGTC-GTTAAAAACTTAAATTAATACCT
*
437025 AAACTACCAGTTTTGATCCGTTTTAGTACCTAAACTTTTAATTTTTTCAAAAACTTACCTAACAT
128 AAACTACCAGTTTTGATCCGTTTTAGTACCTAAACTTATAATTTTTTCAAAAACTTACCTAACAT
***
437090 TTAGTTTTCATTTCATTTTAGTA-ACTTGATGTAAAAAACTTAACGCGC
193 TTAGTTTTCATTTCATTTTAGTACACCACAT-TAAAAAACTTAACGCGC
* * *
437138 TTAGTACATAATTTATTAGTTTTGGTATGTTTTAGTACCTAAATTTTTAATTTTTTCAAAAACTT
1 TTAGTACATAAATTATCAGTTTTGGTATGTTTTAGTACCTAAATTTTAAATTTTTTCAAAAACTT
*
437203 ACCTAACTTTTAGTTTTCATTTAATTTTAGTACCATGTCGTTAAAAACTTAACATGATAAATACC
66 ACCTAACTTTTAGTTTTCATTTCATTTTAGTACCATGTCGTTAAAAACTTAA-AT--T-AATACC
* *
437268 TAAACTATCAGTTTTGATCCGTTTTAGTACCTAAACTTATATTTTTTTCAAAAACTTACCTAACA
127 TAAACTACCAGTTTTGATCCGTTTTAGTACCTAAACTTATAATTTTTTCAAAAACTTACCTAACA
* * * * *
437333 TTTGGTTTTCATTTCATTTTAGTACCCCACATTTAAAAATTTAACGCGT
192 TTTAGTTTTCATTTCATTTTAGTACACCACATTAAAAAACTTAACGCGC
* * * * * * * * *
437382 TTAGTGCGTAAACTATCAGTTTCGGTATGCTTTAGTGCCTAAACTTTCAATTTTTTAAAAAACTT
1 TTAGTACATAAATTATCAGTTTTGGTATGTTTTAGTACCTAAATTTTAAATTTTTTCAAAAACTT
* *
437447 ACCTAA-TGTTTAGTTTTCATTTCATTTTAGTACCCTATCGTTAAAAACTTA
66 ACCTAACT-TTTAGTTTTCATTTCATTTTAGTACCATGTCGTTAAAAACTTA
437498 TGCGTTTAGT
Statistics
Matches: 310, Mismatches: 42, Indels: 13
0.85 0.12 0.04
Matches are distributed among these distances:
239 54 0.17
240 5 0.02
241 42 0.14
243 2 0.01
244 204 0.66
245 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (240 bp):
TTAGTACATAAATTATCAGTTTTGGTATGTTTTAGTACCTAAATTTTAAATTTTTTCAAAAACTT
ACCTAACTTTTAGTTTTCATTTCATTTTAGTACCATGTCGTTAAAAACTTAAATTAATACCTAAA
CTACCAGTTTTGATCCGTTTTAGTACCTAAACTTATAATTTTTTCAAAAACTTACCTAACATTTA
GTTTTCATTTCATTTTAGTACACCACATTAAAAAACTTAACGCGC
Found at i:443879 original size:16 final size:16
Alignment explanation
Indices: 443858--443889 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
443848 TATTCGACTC
443858 GAAAAACATACATGAT
1 GAAAAACATACATGAT
*
443874 GAAAAACGTACATGAT
1 GAAAAACATACATGAT
443890 ATCAAAAGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.19
Consensus pattern (16 bp):
GAAAAACATACATGAT
Found at i:447030 original size:17 final size:17
Alignment explanation
Indices: 447008--447043 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
446998 TGAGAGCTAA
447008 ATTGATGTGAAAATATG
1 ATTGATGTGAAAATATG
447025 ATTGATGTGAAAATATG
1 ATTGATGTGAAAATATG
447042 AT
1 AT
447044 AGGTGCGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (17 bp):
ATTGATGTGAAAATATG
Found at i:447053 original size:17 final size:17
Alignment explanation
Indices: 447011--447053 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
447001 GAGCTAAATT
* *
447011 GATGTGAAAATATGATT
1 GATGCGAAAATATGATA
*
447028 GATGTGAAAATATGATA
1 GATGCGAAAATATGATA
*
447045 GGTGCGAAA
1 GATGCGAAA
447054 GTGATAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.28, T:0.28
Consensus pattern (17 bp):
GATGCGAAAATATGATA
Found at i:457003 original size:18 final size:18
Alignment explanation
Indices: 456980--457015 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
456970 ACAGACGGTA
456980 TAGTTTGGACACTTGTTT
1 TAGTTTGGACACTTGTTT
*
456998 TAGTTTGGGCACTTGTTT
1 TAGTTTGGACACTTGTTT
457016 ATTTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.11, G:0.25, T:0.50
Consensus pattern (18 bp):
TAGTTTGGACACTTGTTT
Found at i:458709 original size:31 final size:30
Alignment explanation
Indices: 458639--458714 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 30
458629 AATTTAAAAA
* *
458639 AAATATTTTAATCATTTACGTTATCTATTT
1 AAATATTTTAATCATTTACATTATCAATTT
* *
458669 ATATCATTTTAAT-ATCTTATATTATCAATTT
1 AAAT-ATTTTAATCAT-TTACATTATCAATTT
*
458700 ACAATATTTTGATCA
1 A-AATATTTTAATCA
458715 GTTCAAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
30 5 0.14
31 28 0.78
32 3 0.08
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.51
Consensus pattern (30 bp):
AAATATTTTAATCATTTACATTATCAATTT
Found at i:459029 original size:35 final size:35
Alignment explanation
Indices: 458984--459061 Score: 147
Period size: 35 Copynumber: 2.2 Consensus size: 35
458974 TCAAAATTAA
*
458984 ACTATAATAATAAAAATTCCACGAGGTCAATTTAG
1 ACTAAAATAATAAAAATTCCACGAGGTCAATTTAG
459019 ACTAAAATAATAAAAATTCCACGAGGTCAATTTAG
1 ACTAAAATAATAAAAATTCCACGAGGTCAATTTAG
459054 ACTAAAAT
1 ACTAAAAT
459062 TATGTCATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.27
Consensus pattern (35 bp):
ACTAAAATAATAAAAATTCCACGAGGTCAATTTAG
Found at i:460202 original size:29 final size:29
Alignment explanation
Indices: 460167--460248 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
460157 AAACTAAATT
*
460167 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
460196 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
460225 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
460249 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:464972 original size:29 final size:29
Alignment explanation
Indices: 464937--465018 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
464927 AAACTAAATT
*
464937 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
464966 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
464995 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
465019 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:467696 original size:239 final size:239
Alignment explanation
Indices: 467301--468182 Score: 1252
Period size: 239 Copynumber: 3.7 Consensus size: 239
467291 AAATTTCGTA
* * * * *
467301 GGTCACTTCGCCTTGAAACCTTC-GACATCTCACTTCCAAATACAATATCGGATTCAAAACCTCA
1 GGTCACTTCGCCTTGACACCTCCAGACATCTCACTTCCAAATGCAATCTCGGAGTCAAAACCTCA
* * * * * *
467365 AATGAGATTGCATTTGAAAGTGAGATGTATGGAGGTGTTTCTTAAGTTTATGCAAAAGACATCTT
66 ATTGAGATTGCACTTGGAAGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCAGAAGACATCTT
* * * *
467430 TTTAATCTATTCAAGTTCGAGATTACAACCCTAATTCAAGGTGGTTGAATACCACTGTCGGCCAA
131 TTTAATCAATTCAAGTTCGAGATTACAACCCCAATTCAAGGTGGTTGAATACCATTGTCAGCCAA
* * * * *
467495 TTTTGACTATCGTATATTATGATTACTC-GATCTTAAATTTCACG
196 TGTCGACTATCATATATTATGATTGCTCAG-TCTCAAATTTCACG
* *
467539 GGTCACTTCGCCTTGACACCTCCAGACAACTCACTTCCAAATGCAATCTCGGAGTTAAAACCTCA
1 GGTCACTTCGCCTTGACACCTCCAGACATCTCACTTCCAAATGCAATCTCGGAGTCAAAACCTCA
*
467604 ATTGAGACTGCACTTGGAAGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCAGAAGACATCTT
66 ATTGAGATTGCACTTGGAAGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCAGAAGACATCTT
* * * *
467669 TTTATTCAATTCAAGTTCGAAATTACAACCCCAATTCAAGGTGGCTGAATACCATTGTCAACC-A
131 TTTAATCAATTCAAGTTCGAGATTACAACCCCAATTCAAGGTGGTTGAATACCATTGTCAGCCAA
*
467733 TCGTCGACTATCATATATTATGATTGCTCAGTCTCAAATTTCATG
196 T-GTCGACTATCATATATTATGATTGCTCAGTCTCAAATTTCACG
*
467778 GGTCACTTCGCCTTGACACCTCCAGACATCTTACTTCCAAATGCAATCTCGGAGTCAAAACCTCA
1 GGTCACTTCGCCTTGACACCTCCAGACATCTCACTTCCAAATGCAATCTCGGAGTCAAAACCTCA
* *
467843 ATTGAGATTGCACTTGGATGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCATAAGACATCTT
66 ATTGAGATTGCACTTGGAAGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCAGAAGACATCTT
* * *
467908 TTTAATCAATTCAAGTTCGAGATTAAAACCCTAATTCAAGGTGGTTGAATACCATTGTCAGCCAC
131 TTTAATCAATTCAAGTTCGAGATTACAACCCCAATTCAAGGTGGTTGAATACCATTGTCAGCCAA
* * *
467973 TGTCGGCTGTCATATATTATGATCGCTCAGTCTCAAATTTCACG
196 TGTCGACTATCATATATTATGATTGCTCAGTCTCAAATTTCACG
* * * * *
468017 AGTCACTTCGTCTTAACACCTCCAGACATCTCACTTCCAAATGCAGTC-CTGAAGTCAAAACCTC
1 GGTCACTTCGCCTTGACACCTCCAGACATCTCACTTCCAAATGCAATCTC-GGAGTCAAAACCTC
* * * * * * *
468081 AATTAAGATTGCATTTGGAAGTGAGATATCTGGAAGTGTTTGTAAAGTTTATGCAGAAGTCATCT
65 AATTGAGATTGCACTTGGAAGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCAGAAGACATCT
468146 TTTT-ATCCAATTCAAGTTCGAGATTACAACCCCAATT
130 TTTTAAT-CAATTCAAGTTCGAGATTACAACCCCAATT
468183 GAGTTCATCA
Statistics
Matches: 576, Mismatches: 62, Indels: 11
0.89 0.10 0.02
Matches are distributed among these distances:
238 26 0.05
239 548 0.95
240 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (239 bp):
GGTCACTTCGCCTTGACACCTCCAGACATCTCACTTCCAAATGCAATCTCGGAGTCAAAACCTCA
ATTGAGATTGCACTTGGAAGTGAGATGTCTGGAGGTGTTTCTGAAGTTTATGCAGAAGACATCTT
TTTAATCAATTCAAGTTCGAGATTACAACCCCAATTCAAGGTGGTTGAATACCATTGTCAGCCAA
TGTCGACTATCATATATTATGATTGCTCAGTCTCAAATTTCACG
Found at i:469107 original size:16 final size:15
Alignment explanation
Indices: 469088--469136 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
469078 TCTAAGTCGT
*
469088 GTTATTTTCGATTCAA
1 GTTA-TTTCAATTCAA
*
469104 GTTACTTCTAATTCAA
1 GTTATTTC-AATTCAA
469120 GTTAATTTCAATTCAA
1 GTT-ATTTCAATTCAA
469136 G
1 G
469137 ATGTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 3 0.11
16 21 0.75
17 4 0.14
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (15 bp):
GTTATTTCAATTCAA
Found at i:469134 original size:32 final size:31
Alignment explanation
Indices: 469060--469136 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
469050 TTCCCTTTTG
* **
469060 AATTTCATTTAAGTTACTTCTAAGTCGTGTT
1 AATTTCATTCAAGTTACTTCTAAGTCAAGTT
* *
469091 ATTTTCGATTCAAGTTACTTCTAATTCAAGTT
1 AATTTC-ATTCAAGTTACTTCTAAGTCAAGTT
469123 AATTTCAATTCAAG
1 AATTTC-ATTCAAG
469137 ATGTTTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 5 0.13
32 33 0.87
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.45
Consensus pattern (31 bp):
AATTTCATTCAAGTTACTTCTAAGTCAAGTT
Found at i:475075 original size:60 final size:59
Alignment explanation
Indices: 475031--475143 Score: 190
Period size: 60 Copynumber: 1.9 Consensus size: 59
475021 ATTTTTTAAA
*
475031 AAATGAAAATTTAGGTATTAAGACATATCAAAATTGATAGTTTAAATAATAAATGAATTT
1 AAATGAAAATTTAAGTATTAAGACATATCAAAATTGATAGTTTAAAT-ATAAATGAATTT
*
475091 AAATGAAAATTTAAGTATTAAGATATATCAAAATTGATAGTTTAAATAATAAA
1 AAATGAAAATTTAAGTATTAAGACATATCAAAATTGATAGTTTAAAT-ATAAA
475144 CATGTAGCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.52, C:0.03, G:0.11, T:0.35
Consensus pattern (59 bp):
AAATGAAAATTTAAGTATTAAGACATATCAAAATTGATAGTTTAAATATAAATGAATTT
Found at i:477784 original size:56 final size:56
Alignment explanation
Indices: 477693--477804 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
477683 CTCTGACGGC
477693 TTAACTCGAGCTAAAAGCTGTAATCCAATCCTATGAAACACAATCAACATAAACTA
1 TTAACTCGAGCTAAAAGCTGTAATCCAATCCTATGAAACACAATCAACATAAACTA
* *
477749 TTAATTCGAGCTAAAAGCTGTAATCCAATCCTATGAAACACAATCAACATGAACTA
1 TTAACTCGAGCTAAAAGCTGTAATCCAATCCTATGAAACACAATCAACATAAACTA
477805 AGGCCAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (56 bp):
TTAACTCGAGCTAAAAGCTGTAATCCAATCCTATGAAACACAATCAACATAAACTA
Found at i:479519 original size:44 final size:43
Alignment explanation
Indices: 479471--479569 Score: 144
Period size: 44 Copynumber: 2.3 Consensus size: 43
479461 AGAAAAGACA
* *
479471 AATAAATAAATAAAATACACTAAAATTAAAAGAGAAAAAAAATG
1 AATAACTAAATAAAAAACACTAAAATTAAAA-AGAAAAAAAATG
* *
479515 AATAACTAAAATAAAAAATACTAAAATTAAAAAGGAAAAAAATG
1 AATAACT-AAATAAAAAACACTAAAATTAAAAAGAAAAAAAATG
479559 AATAACTAAAT
1 AATAACTAAAT
479570 TGAAATAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
43 4 0.08
44 24 0.48
45 22 0.44
ACGTcount: A:0.70, C:0.05, G:0.06, T:0.19
Consensus pattern (43 bp):
AATAACTAAATAAAAAACACTAAAATTAAAAAGAAAAAAAATG
Found at i:479525 original size:40 final size:40
Alignment explanation
Indices: 479460--479568 Score: 112
Period size: 44 Copynumber: 2.6 Consensus size: 40
479450 AAATAAAAAT
* *
479460 AAGAAAAGACAAATAAATAAATAAAAT-ACACTAAAATTAAA
1 AAGAAAA-A-AAATGAATAACTAAAATAACACTAAAATTAAA
*
479501 AGAGAAAAAAAATGAATAACTAAAATAAAAAATACTAAAATTAAA
1 A-AGAAAAAAAATGAATAACTAAAAT----AACACTAAAATTAAA
*
479546 AAGGAAAAAAATGAATAACTAAA
1 AAGAAAAAAAATGAATAACTAAA
479569 TTGAAATAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
40 15 0.26
41 2 0.03
42 6 0.10
44 21 0.36
45 14 0.24
ACGTcount: A:0.71, C:0.06, G:0.07, T:0.17
Consensus pattern (40 bp):
AAGAAAAAAAATGAATAACTAAAATAACACTAAAATTAAA
Found at i:479538 original size:45 final size:44
Alignment explanation
Indices: 479478--479568 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 44
479468 ACAAATAAAT
*
479478 AAATAAAATACACTAAAATTAAAAGAGAAAAAAAATGAATAACTA
1 AAATAAAAAACACTAAAATTAAAA-AGAAAAAAAATGAATAACTA
* *
479523 AAATAAAAAATACTAAAATTAAAAAGGAAAAAAATGAATAACTA
1 AAATAAAAAACACTAAAATTAAAAAGAAAAAAAATGAATAACTA
479567 AA
1 AA
479569 TTGAAATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
44 21 0.49
45 22 0.51
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (44 bp):
AAATAAAAAACACTAAAATTAAAAAGAAAAAAAATGAATAACTA
Found at i:479574 original size:22 final size:22
Alignment explanation
Indices: 479506--479579 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
479496 TTAAAAGAGA
479506 AAAAAAATGAATAACTAAAAT-
1 AAAAAAATGAATAACTAAAATG
* *
479527 AAAAAATACT-AA-AATTAAAAAGG
1 AAAAAA-A-TGAATAACT-AAAATG
*
479550 AAAAAAATGAATAACTAAATTG
1 AAAAAAATGAATAACTAAAATG
*
479572 AAATAAAT
1 AAAAAAAT
479580 TAAAATTGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
21 10 0.24
22 21 0.51
23 10 0.24
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (22 bp):
AAAAAAATGAATAACTAAAATG
Found at i:479584 original size:44 final size:44
Alignment explanation
Indices: 479491--479586 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
479481 TAAAATACAC
479491 TAAAATTAAAAGAGAAAAAAAATGAATAACTAAAATAAAAAATA
1 TAAAATTAAAAGAGAAAAAAAATGAATAACTAAAATAAAAAATA
* *
479535 CTAAAATTAAAA-AGGAAAAAAATGAATAACTAAATTGAAATAAAT-
1 -TAAAATTAAAAGAGAAAAAAAATGAATAACTAAAAT-AAA-AAATA
479580 TAAAATT
1 TAAAATT
479587 GATAGATTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
44 29 0.62
45 14 0.30
46 4 0.09
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.22
Consensus pattern (44 bp):
TAAAATTAAAAGAGAAAAAAAATGAATAACTAAAATAAAAAATA
Found at i:489260 original size:9 final size:10
Alignment explanation
Indices: 489231--489260 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
489221 GAGAAATACC
489231 GCCTGGGGGG
1 GCCTGGGGGG
489241 GCCTGGGGGG
1 GCCTGGGGGG
489251 GCC-GGGGGG
1 GCCTGGGGGG
489260 G
1 G
489261 GGGGGAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.00, C:0.20, G:0.73, T:0.07
Consensus pattern (10 bp):
GCCTGGGGGG
Found at i:492125 original size:20 final size:20
Alignment explanation
Indices: 492096--492134 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
492086 ATTTCAACAC
*
492096 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
492116 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
492135 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Done.