genome.fa.s4694.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004694.1 Hibiscus syriacus cultivar Beakdansim tig00010539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50996

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108--1152	3	15.0	3	100	0	90	33	0	0	66	0.92
1802--2203	51	8.0	51	83	5	482	36	26	18	18	1.94
1802--2199	153	2.6	152	87	4	540	36	26	18	18	1.94
6485--6511	2	13.5	2	100	0	54	51	0	48	0	1.00
14906--15039	60	2.2	61	77	2	137	33	15	6	44	1.73
26154--26191	20	1.9	20	89	10	60	60	7	2	28	1.38
26203--26245	2	21.5	2	100	0	86	51	0	0	48	1.00
26980--27034	2	27.5	2	100	0	110	49	0	50	0	1.00
27431--27487	30	1.9	30	92	0	96	47	3	12	36	1.58
27779--27810	12	2.6	13	85	14	50	34	6	6	53	1.51
28582--28641	22	2.8	22	84	2	86	31	25	11	31	1.91
28900--29038	70	2.0	70	100	0	278	33	17	15	33	1.92
29249--29300	20	2.6	19	79	8	59	25	19	25	30	1.98
30308--30354	24	2.0	24	100	0	94	59	0	0	40	0.97
31324--31383	27	2.2	27	82	5	77	53	0	1	45	1.10
35683--35901	111	2.0	111	100	0	438	34	20	10	34	1.88
43648--43822	81	2.2	80	88	3	251	17	30	21	30	1.96
43938--44239	54	5.5	54	80	7	302	25	26	22	26	2.00
43941--44206	27	9.5	28	67	19	119	24	27	22	25	2.00
43941--44152	113	1.9	114	92	1	363	25	25	23	25	2.00
43941--44239	109	2.7	110	84	4	334	25	26	22	26	2.00
47911--47947	18	2.1	18	89	0	56	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50429--50500	16	4.6	16	89	1	110	36	6	20	36	1.80
50557--50586	12	2.4	13	94	5	53	30	13	13	43	1.82

Tables:   1

The End!