genome.fa.s4695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004695.1 Hibiscus syriacus cultivar Beakdansim tig00010540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52839

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159--189	16	1.9	16	100	0	62	25	25	22	25	2.00
146--298	64	2.5	61	85	7	193	28	21	20	30	1.98
4329--4363	15	2.2	17	90	10	56	5	20	5	68	1.31
7644--7684	3	14.0	3	85	14	59	68	0	0	31	0.90
7845--7956	40	2.7	40	81	9	120	25	20	31	22	1.98
8174--8308	63	2.1	63	83	5	164	42	14	10	32	1.79
8486--8546	31	1.9	31	83	9	79	40	13	14	31	1.84
8810--8888	38	2.1	38	85	4	106	31	10	18	39	1.84
9493--9540	4	12.5	4	82	8	64	25	0	22	52	1.48
9487--9538	16	2.9	19	77	13	58	26	0	21	51	1.47
9493--9546	12	4.3	13	81	13	69	24	0	24	51	1.48
10691--10740	23	2.3	20	80	10	55	2	16	12	70	1.26
14443--14483	22	1.9	22	90	5	66	58	9	0	31	1.31
16355--16389	3	12.0	3	87	6	54	65	0	0	34	0.93
16356--16399	17	2.6	17	89	3	63	68	0	0	31	0.90
21062--21416	133	2.6	132	86	3	485	25	18	30	24	1.98
21709--21939	29	7.9	30	72	20	125	46	15	11	26	1.80
21644--21855	91	2.3	91	80	7	259	45	14	13	26	1.82
21828--21989	29	5.4	31	84	6	131	43	14	12	30	1.82
21967--22174	64	3.2	65	80	6	215	42	12	12	32	1.80
22089--22269	100	1.8	101	82	8	235	42	13	12	31	1.81
22241--22299	31	1.9	31	93	3	102	42	15	13	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22337--22474	36	3.8	36	85	3	172	34	13	18	33	1.90
33081--33119	17	2.3	17	100	0	78	33	0	5	61	1.18
36523--36600	39	2.0	39	87	0	111	24	6	11	57	1.57
48966--48996	14	2.2	14	94	0	53	32	0	6	61	1.21
50204--50295	46	2.0	46	100	0	184	34	19	13	32	1.90
52655--52777	49	2.5	50	87	2	176	30	8	20	40	1.83

Tables:   1

The End!