genome.fa.s4698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004698.1 Hibiscus syriacus cultivar Beakdansim tig00010550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126692

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5991--6056	23	2.7	23	76	6	69	72	6	0	21	1.05
9865--9943	24	3.5	22	79	8	79	53	12	7	26	1.65
12575--12636	22	2.8	23	85	4	74	24	16	17	41	1.89
13463--13663	58	3.5	57	78	8	194	37	6	13	41	1.71
17571--17606	18	2.0	18	94	0	63	16	0	52	30	1.44
17867--17908	2	21.5	2	95	4	77	50	0	0	50	1.00
19641--19847	64	3.2	64	89	4	276	27	17	20	33	1.96
23018--23078	31	2.0	31	87	6	88	39	19	19	21	1.93
23732--23952	64	3.5	64	85	3	259	28	18	19	33	1.95
26661--26685	13	1.9	13	100	0	50	16	44	8	32	1.76
31675--31729	26	2.1	26	96	0	101	40	16	25	18	1.91
33934--33968	17	1.9	19	88	11	56	31	8	34	25	1.86
60573--60603	11	2.8	11	95	0	53	41	0	0	58	0.98
60494--60658	90	1.8	90	100	0	330	47	3	2	46	1.33
63443--63561	24	5.0	24	86	10	154	40	19	15	25	1.90
63443--63579	48	2.9	47	79	6	141	41	18	14	24	1.89
68094--68145	24	2.2	24	82	0	59	50	17	11	21	1.77
68114--68232	24	5.0	24	85	6	143	40	17	15	26	1.89
68175--68212	12	3.2	12	78	14	51	39	21	10	28	1.86
70695--70746	7	7.4	7	75	16	54	25	25	34	15	1.95
70710--70754	20	2.2	20	96	0	81	20	24	40	15	1.91
70686--70746	15	4.1	15	75	14	56	24	26	34	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77766--77823	28	2.1	28	100	0	116	24	37	15	22	1.93
87071--87096	2	13.0	2	100	0	52	50	0	50	0	1.00
91926--94133	4	553.5	4	99	0	4374	25	25	0	50	1.50
95332--95375	21	2.1	21	100	0	88	47	18	4	29	1.68
100419--100452	2	17.0	2	100	0	68	50	0	0	50	1.00
100922--101011	31	2.9	31	82	15	98	43	0	0	56	0.99
100918--100991	2	40.5	2	77	17	63	43	0	0	56	0.99
102450--102491	21	2.0	21	86	9	59	73	2	0	23	0.94
102455--102495	19	2.2	20	86	8	59	73	2	0	24	0.96
102454--102501	19	2.4	19	80	16	53	72	2	0	25	0.95
102892--103133	102	2.3	104	83	6	301	40	12	19	26	1.87
103090--103185	37	2.7	36	79	4	113	42	14	19	22	1.88
103068--103166	37	2.5	39	82	8	112	44	17	19	19	1.87
103308--103531	124	1.8	124	89	0	349	21	20	25	31	1.98
103745--104046	101	2.9	105	79	13	352	24	18	23	33	1.97
108124--108175	9	5.2	10	80	11	54	69	0	1	28	0.99
108124--108194	21	3.4	21	81	11	67	66	1	1	30	1.09
108140--108182	18	2.4	18	81	11	52	67	2	0	30	1.03
110492--110582	27	3.3	28	80	9	89	47	2	1	49	1.21
110514--110598	27	3.1	27	80	9	93	48	1	0	50	1.08
111500--112203	351	2.0	351	97	0	1318	41	19	14	23	1.89
112191--112225	18	2.0	17	88	5	52	51	11	5	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119599--119661	27	2.3	27	81	5	74	47	4	7	39	1.54
122616--122668	10	6.1	10	68	31	50	58	22	11	7	1.57
122620--122668	16	3.1	16	100	0	98	57	24	12	6	1.58
122734--122788	16	3.4	16	94	0	101	56	21	12	9	1.64
123499--123574	14	6.0	13	75	22	65	53	23	11	10	1.68
123499--123573	24	3.1	24	94	0	123	54	24	10	10	1.66
123509--123553	10	4.1	10	79	20	54	57	20	11	11	1.63

Tables:   1

The End!