genome.fa.s4699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004699.1 Hibiscus syriacus cultivar Beakdansim tig00010559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104705

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504--1954	105	4.3	106	89	6	672	26	25	17	30	1.97
1504--1954	53	8.6	52	87	8	616	26	25	17	30	1.97
1502--1954	213	2.2	206	90	6	705	26	25	17	30	1.97
3285--3393	24	4.5	24	79	8	112	8	9	0	82	0.84
3285--3396	23	5.0	21	73	19	84	8	9	0	81	0.88
3310--3385	8	9.8	8	88	11	122	10	10	0	78	0.95
3285--3396	16	7.1	16	79	12	106	8	9	0	81	0.88
3280--3329	1	50.0	1	83	0	55	4	4	2	90	0.62
3285--3393	8	13.4	8	80	15	82	8	9	0	82	0.84
9437--9480	6	7.2	6	79	5	52	47	13	20	18	1.82
20793--20836	23	1.9	23	86	9	63	31	2	0	65	1.05
21683--21784	27	3.8	25	74	14	78	39	0	1	57	1.16
21700--21732	17	1.9	17	88	11	50	39	3	0	57	1.14
21714--21847	31	4.4	31	80	8	134	41	3	1	53	1.28
40552--40624	33	2.2	33	90	7	112	30	12	21	35	1.90
40736--40884	4	39.0	4	84	9	204	47	0	51	0	1.05
42062--42140	37	2.1	37	83	0	95	51	11	10	26	1.69
48531--48563	16	2.1	16	94	0	57	27	18	18	36	1.94
55260--55295	17	2.2	16	90	9	56	47	5	11	36	1.63
58190--58330	31	4.5	31	93	0	246	53	14	9	21	1.69
59353--59406	23	2.3	24	81	9	67	50	3	3	42	1.38
60115--60147	14	2.4	14	85	5	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60739--60818	27	3.0	27	90	0	133	6	22	22	48	1.72
60997--61067	37	1.9	37	88	2	108	33	19	4	42	1.71
60977--61067	37	2.4	38	83	7	105	34	19	4	41	1.72
61492--61549	28	2.1	28	96	0	107	36	18	18	25	1.95
62314--62363	20	2.5	20	100	0	100	56	0	0	44	0.99
62543--62571	14	2.0	15	93	6	51	6	37	6	48	1.57
62650--62813	60	2.7	57	78	15	161	35	17	3	43	1.67
62668--62813	60	2.4	60	82	6	170	36	17	3	42	1.66
63876--63924	13	3.7	13	91	8	73	65	0	4	30	1.11
65714--65772	16	3.7	16	88	0	91	61	22	8	8	1.52
66854--66895	14	3.0	14	89	0	57	54	19	14	11	1.70
69667--69749	31	2.7	31	94	0	148	55	4	4	34	1.42
70822--70886	23	2.8	23	75	6	60	40	12	15	32	1.84
70795--70885	46	2.0	46	82	0	110	39	13	15	31	1.86
71040--71081	2	21.0	2	100	0	84	50	0	0	50	1.00
73443--73513	35	2.0	35	83	0	88	50	11	9	28	1.70
79914--79961	24	2.0	24	91	0	78	33	12	20	33	1.90
82018--82061	22	2.0	22	100	0	88	40	9	22	27	1.84
90443--90923	258	1.9	261	84	2	655	23	30	12	33	1.92
95260--95320	31	2.0	31	87	6	88	26	6	11	55	1.59
99344--99464	65	1.9	63	83	8	154	30	18	23	28	1.97
99364--99519	64	2.4	65	84	5	183	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99407--99532	64	2.0	64	84	3	164	28	17	23	30	1.97
99407--99551	64	2.3	64	81	4	150	28	18	23	28	1.98
101038--101078	21	2.0	21	95	0	73	39	9	17	34	1.82
102093--102150	20	2.8	21	86	5	73	27	20	29	22	1.99
102093--102194	22	4.7	22	79	8	104	28	20	26	24	1.99
102099--102214	43	2.7	43	78	13	123	27	20	25	26	1.99

Tables:   1

The End!