Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000047.1 Hibiscus syriacus cultivar Beakdansim tig00000073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112515

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1229--1258
15
2.0
15
93
0
51
30
6
16
46
1.73
11455--11491
16
2.3
16
100
0
74
32
16
16
35
1.91
21358--21408
12
4.1
12
76
18
59
68
9
5
15
1.36
21971--22012
21
2.0
21
90
0
66
26
26
23
23
2.00
24750--24791
21
2.0
21
95
0
75
30
28
16
23
1.96
24903--24977
20
4.1
19
77
22
97
16
29
34
20
1.94
24903--24972
34
2.0
36
89
10
110
17
30
32
20
1.95
28914--29126
103
2.1
103
95
0
381
26
13
23
36
1.92
29143--29210
23
3.0
23
82
4
84
25
26
23
25
2.00
29239--29272
17
2.1
17
88
5
52
26
23
11
38
1.89
34117--34329
103
2.1
103
94
0
372
26
13
23
37
1.91
34346--34413
23
3.0
23
91
0
100
20
27
26
25
1.99
36395--36458
22
2.9
22
83
4
76
28
25
21
25
1.99
36420--36475
22
2.5
22
85
5
67
26
25
21
26
1.99
36460--36517
30
1.9
30
89
0
89
32
18
18
29
1.96
37776--37830
20
2.8
20
91
0
74
14
27
30
27
1.95
41260--41316
30
1.9
30
85
7
80
33
17
19
29
1.95
48710--48751
17
2.5
17
96
0
75
33
11
33
21
1.90
52181--52213
17
1.9
17
100
0
66
33
12
12
42
1.79
58763--58823
30
2.0
31
93
6
108
34
6
16
42
1.74
58903--58959
21
2.7
21
86
0
78
22
35
17
24
1.95
63362--63415
18
3.1
18
68
26
53
35
1
12
50
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65603--65740
58
2.4
58
100
0
276
37
2
11
47
1.55
68046--68183
71
2.0
70
89
4
215
31
20
20
28
1.97
68437--68570
71
1.9
71
87
1
198
33
18
19
28
1.96
68050--68824
387
2.0
387
98
0
1487
31
20
20
28
1.97
73105--73165
18
3.3
17
76
13
59
27
32
18
21
1.96
73115--73177
18
3.4
17
75
16
63
31
30
17
20
1.96
84514--84543
12
2.5
12
94
0
51
30
10
10
50
1.69
88413--88474
18
3.4
17
80
12
61
30
32
14
22
1.94
88431--88494
20
3.3
20
80
8
78
31
31
15
21
1.95
88424--88485
18
3.3
18
82
8
79
33
32
14
19
1.92
88697--88743
21
2.2
21
92
0
76
53
6
8
31
1.57
98904--98948
21
2.1
21
83
0
54
53
6
11
28
1.61
102534--103621
425
2.5
424
79
8
1132
34
9
13
42
1.76
108893--108932
8
5.1
8
81
6
55
35
0
27
37
1.57
109013--109847
124
6.7
125
89
6
1183
21
24
20
33
1.97
109013--109847
249
3.4
252
90
6
1302
21
24
20
33
1.97
109013--109847
375
2.2
372
90
6
1324
21
24
20
33
1.97
110245--110342
33
3.0
33
84
3
126
38
3
4
54
1.35
110848--110955
21
5.2
20
84
10
137
23
24
33
19
1.97
110848--110955
42
2.6
42
92
1
173
23
24
33
19
1.97
110964--111004
21
2.0
20
90
4
64
26
9
34
29
1.88

Tables:   1

The End!