Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000470.1 Hibiscus syriacus cultivar Beakdansim tig00000874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60432

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3714--3751
20
1.9
20
88
0
58
10
26
36
26
1.89
10747--10807
22
2.8
22
92
2
97
9
36
31
22
1.87
10834--10876
21
2.0
21
86
0
59
16
25
27
30
1.97
16874--16937
23
2.8
22
80
4
74
28
26
25
20
1.99
17549--17586
20
1.9
20
88
0
58
10
31
34
23
1.89
17613--17653
21
2.0
21
85
0
55
17
24
29
29
1.97
20767--20799
2
16.5
2
100
0
66
51
0
0
48
1.00
23706--23769
29
2.2
29
83
10
78
35
1
4
57
1.29
24036--24119
3
28.0
3
87
0
123
38
1
0
60
1.04
26132--26180
17
3.0
16
88
11
73
24
2
0
73
0.94
27837--27879
14
3.1
14
82
0
59
27
16
2
53
1.55
30780--30813
2
17.0
2
100
0
68
50
0
0
50
1.00
33370--33593
114
2.0
113
92
0
376
33
15
20
31
1.93
36168--36246
22
3.6
22
87
3
106
32
15
13
37
1.87
36685--37639
112
8.5
112
94
0
1507
38
13
19
27
1.90
36685--37639
225
4.2
225
92
0
1493
38
13
19
27
1.90
36685--37639
337
2.8
337
94
0
1617
38
13
19
27
1.90
37903--37983
3
27.0
3
89
0
126
37
1
0
61
1.04
44648--44685
20
1.9
20
88
0
58
36
7
2
52
1.45
45560--45662
53
1.9
53
98
0
197
33
28
5
32
1.81
45832--45991
23
7.0
23
91
0
230
29
25
26
18
1.98
46574--46626
22
2.4
21
75
9
52
35
15
3
45
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48272--48316
23
2.0
22
83
16
56
44
17
2
35
1.62
48526--48583
30
1.9
31
82
3
73
32
22
22
22
1.98
48548--48733
31
5.9
31
77
13
175
30
19
19
31
1.96
48549--48734
63
3.0
62
89
3
275
30
18
19
31
1.96
50708--50810
44
2.3
45
83
9
122
22
20
22
34
1.96
53193--53251
30
2.0
30
93
0
100
25
8
10
55
1.61
53483--53588
26
4.2
24
72
22
85
45
2
0
51
1.15
53542--53593
22
2.3
21
81
12
59
44
1
0
53
1.11
53552--53594
22
2.0
22
95
0
77
44
0
0
55
0.99
55504--55536
16
2.1
16
100
0
66
39
24
24
12
1.89
55630--55700
29
2.5
28
84
8
90
22
9
11
56
1.64
60213--60285
31
2.4
29
84
8
85
28
2
1
67
1.13

Tables:   1

The End!