genome.fa.s4700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004700.1 Hibiscus syriacus cultivar Beakdansim tig00010560_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119539

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22025--22053	12	2.3	13	94	5	51	27	3	6	62	1.37
25356--25442	35	2.5	34	80	12	97	55	10	8	26	1.61
27771--27808	10	3.8	10	96	0	67	39	0	31	28	1.57
29607--29655	24	2.0	24	96	0	89	38	8	10	42	1.68
33391--33459	24	2.9	24	82	4	68	52	2	10	34	1.50
33508--33533	2	13.0	2	100	0	52	50	0	0	50	1.00
34526--34595	31	2.2	31	80	14	81	44	2	8	44	1.49
35438--35483	22	2.1	22	83	0	56	63	2	2	32	1.19
36768--36925	78	2.0	78	98	0	307	25	11	27	34	1.91
38238--38278	20	2.0	20	95	0	73	48	17	12	21	1.79
38338--38426	32	2.8	32	89	0	142	47	29	2	21	1.63
42094--42124	15	2.0	16	93	6	55	32	12	12	41	1.81
50926--50952	4	6.8	4	100	0	54	74	0	0	25	0.83
52183--52208	9	2.9	9	100	0	52	11	34	11	42	1.77
52663--52708	24	1.9	24	90	0	74	39	26	19	15	1.91
52676--52798	23	5.3	23	85	4	124	34	25	22	17	1.95
54040--54113	15	4.9	15	71	11	53	36	21	1	40	1.62
54043--54121	14	5.3	15	74	18	51	32	20	1	45	1.59
55653--55775	31	3.8	31	69	17	88	52	12	10	24	1.70
55629--55793	68	2.4	68	94	0	294	48	13	12	25	1.77
58233--58310	29	2.7	29	76	4	77	43	16	21	17	1.88
59638--59708	10	6.7	10	73	12	52	25	35	26	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59655--59708	20	2.7	20	91	0	90	24	33	29	12	1.92
59710--59760	23	2.2	23	85	0	66	27	27	35	9	1.88
59724--59769	23	2.0	23	91	8	76	26	23	39	10	1.88
59787--59842	29	1.9	29	92	0	94	19	28	37	14	1.91
59901--59957	29	2.0	29	89	0	87	19	26	35	19	1.95
60419--60479	32	1.9	32	90	6	97	65	3	6	24	1.32
60787--61352	282	2.0	276	92	4	942	43	8	4	42	1.56
61148--61190	21	2.0	22	86	4	61	55	6	6	30	1.53
61148--61191	22	2.0	22	82	8	54	56	6	6	29	1.51
61897--62056	65	2.5	63	84	6	196	31	23	17	26	1.97
63373--63420	19	2.5	20	89	3	71	54	6	10	29	1.59
64679--64738	30	2.0	30	90	6	95	36	6	13	43	1.70
64916--64979	21	3.1	21	75	8	69	20	25	28	26	1.99
65015--65065	20	2.5	20	100	0	102	29	31	19	19	1.97
66780--66819	21	1.9	21	90	10	64	55	0	7	37	1.29
71399--71443	21	2.1	21	87	0	63	31	28	24	15	1.96
72121--72274	31	5.0	31	92	1	247	21	20	21	37	1.95
75272--75312	21	2.0	21	85	0	55	29	29	24	17	1.97
75989--76142	31	5.0	31	92	1	247	21	20	21	37	1.95
79012--79037	2	13.0	2	100	0	52	50	0	0	50	1.00
79558--79717	65	2.5	66	86	5	211	30	23	19	26	1.98
84040--84071	16	2.0	16	93	0	55	15	12	12	59	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84657--84857	5	40.8	5	66	26	58	73	4	4	16	1.17
84688--84733	18	2.6	17	86	10	65	80	2	0	17	0.81
84648--84856	8	24.1	8	65	17	53	74	4	4	16	1.17
84761--84857	18	5.5	18	77	14	87	77	2	2	18	0.97
84761--84875	23	5.0	23	72	17	94	73	1	2	21	1.04
84849--84890	18	2.4	17	85	14	59	59	0	7	33	1.25
88251--88604	145	2.4	145	80	2	381	21	25	19	33	1.97
88349--88654	145	2.1	145	87	2	436	21	25	22	30	1.99
88964--89046	3	26.7	3	81	7	67	54	0	2	43	1.13
88961--89030	25	2.8	25	93	2	115	52	0	4	42	1.20
88969--89048	40	2.0	40	82	4	99	52	0	2	45	1.14
88964--89046	28	3.2	26	82	12	100	54	0	2	43	1.13
92848--92894	20	2.4	21	82	10	55	31	8	2	57	1.41
94728--94778	22	2.4	21	86	3	66	56	0	0	43	0.99
95035--95093	28	2.0	28	83	9	73	50	1	0	47	1.11
95046--95101	13	3.9	14	72	11	51	48	0	0	51	1.00
98068--98193	50	2.5	50	80	0	153	22	27	33	16	1.95
101496--101555	23	2.6	23	86	2	75	45	1	6	46	1.39
107869--107926	30	1.9	31	89	10	93	53	6	6	32	1.54
107898--107937	19	2.0	20	85	4	55	57	5	5	32	1.42
108152--108177	3	8.7	3	100	0	52	0	34	30	34	1.58
113392--113491	24	4.2	24	71	10	78	23	12	17	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114490--114540	19	2.7	19	85	8	70	25	15	35	23	1.94
117023--117100	24	3.4	23	73	21	83	29	24	24	21	1.99

Tables:   1

The End!