Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004701.1 Hibiscus syriacus cultivar Beakdansim tig00010561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35791

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
629--814
75
2.5
75
88
5
270
19
24
32
23
1.97
1377--1424
23
2.1
23
84
7
62
56
29
0
14
1.39
9136--9344
75
2.8
76
88
2
287
20
23
32
24
1.98
9594--9656
23
2.7
23
87
4
92
20
26
26
25
1.99
11202--11288
39
2.2
39
87
4
122
32
19
0
48
1.49
16529--16553
13
1.9
13
100
0
50
24
8
12
56
1.62
16859--16896
20
1.9
20
84
10
51
23
5
28
42
1.76
20078--20173
42
2.3
41
82
8
113
30
12
25
32
1.92
20144--20278
42
3.3
41
79
15
170
36
22
19
22
1.95
20167--20299
42
3.2
41
77
17
157
36
21
17
24
1.95
20261--20475
41
5.2
41
80
5
195
35
16
16
31
1.91
20313--20455
41
3.5
41
85
0
198
37
13
17
31
1.89
20304--20479
82
2.1
82
86
2
246
35
15
17
31
1.91
21711--21808
43
2.3
44
80
5
110
26
18
22
32
1.97
21867--22177
41
7.5
41
85
4
349
28
20
17
33
1.95
28497--28950
51
8.6
55
83
7
233
29
25
15
29
1.96
28498--28687
55
3.4
55
84
7
210
32
22
14
31
1.94
28622--28965
51
6.7
51
87
3
424
29
26
15
28
1.96
30276--30402
9
14.4
8
69
22
60
6
18
0
74
1.08
30277--30336
27
2.1
27
85
11
77
6
20
0
73
1.05
30304--30376
33
2.2
33
79
11
80
6
17
1
73
1.11
30288--30388
27
4.0
24
73
24
75
5
17
0
75
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30288--30379
35
2.7
32
77
17
87
6
17
1
75
1.08
30286--30395
25
4.2
26
74
15
86
5
19
0
74
1.06
30357--30405
20
2.5
20
83
3
64
6
16
0
77
0.96

Tables:   1

The End!