genome.fa.s4702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004702.1 Hibiscus syriacus cultivar Beakdansim tig00010567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103974

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426--542	25	4.7	25	81	9	114	45	17	3	33	1.66
426--533	50	2.2	50	83	6	130	45	17	3	33	1.66
499--543	12	3.7	12	78	3	54	46	20	4	28	1.69
4090--4168	19	3.8	20	77	12	63	17	25	32	24	1.97
4091--4170	20	3.9	20	76	13	65	16	26	32	25	1.96
11094--11568	220	2.2	218	82	4	562	26	15	23	34	1.94
12575--12609	12	3.0	12	87	8	54	62	8	8	20	1.49
12578--12624	12	4.1	12	81	8	53	55	8	12	23	1.64
12564--12609	23	2.0	23	86	0	65	65	10	8	15	1.47
16902--16939	20	1.9	20	88	0	58	28	31	23	15	1.96
20382--20420	16	2.4	16	91	4	60	79	0	2	17	0.84
21657--21865	102	2.0	102	85	1	276	22	15	18	43	1.88
24168--24202	12	3.0	12	87	8	54	62	8	8	20	1.49
24171--24217	12	4.1	12	81	8	53	55	8	12	23	1.64
24157--24202	23	2.0	23	86	0	65	65	10	8	15	1.47
24784--24829	3	14.7	3	82	8	56	41	0	0	58	0.98
24775--24832	25	2.5	23	81	13	73	44	0	0	55	0.99
24765--24823	19	3.2	19	79	16	70	47	1	0	50	1.11
24789--24839	25	2.0	25	88	0	75	45	1	0	52	1.12
26533--26602	32	2.2	32	94	5	124	35	2	2	58	1.28
27883--27938	26	2.0	28	90	10	89	16	12	0	71	1.15
27907--27937	11	2.8	11	95	0	53	16	12	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27920--27950	16	1.9	16	100	0	62	16	12	0	70	1.16
47221--47304	32	2.6	32	88	0	114	33	10	22	33	1.89
47752--47828	38	2.0	38	94	0	136	32	11	15	40	1.84
48104--48132	13	2.1	14	93	6	51	48	0	0	51	1.00
48747--48798	22	2.4	21	75	12	52	53	0	1	44	1.11
50919--50993	35	2.1	35	92	0	123	33	29	28	9	1.88
51070--51144	24	3.2	23	84	5	105	36	21	17	25	1.95
51074--51159	23	3.7	23	84	3	109	38	19	17	24	1.93
51053--51166	47	2.4	47	80	2	131	40	20	14	24	1.90
52304--52339	18	2.0	18	88	0	54	30	16	0	52	1.44
53651--53682	7	4.4	7	92	7	55	25	28	34	12	1.92
53652--53698	8	6.5	8	79	20	59	21	25	38	14	1.92
53652--53698	15	3.3	15	91	5	71	21	25	38	14	1.92
53659--53703	13	3.3	13	90	6	63	17	24	42	15	1.88
53680--53744	18	3.6	18	95	0	112	9	18	52	20	1.72
55761--55835	35	2.1	35	92	0	123	33	29	28	9	1.88
55913--55987	24	3.2	23	84	5	105	36	21	17	25	1.95
55917--56002	23	3.7	23	84	3	109	38	19	17	24	1.93
55896--56009	47	2.4	47	80	2	131	40	20	14	24	1.90
57146--57181	18	2.0	18	88	0	54	30	16	0	52	1.44
58491--58522	7	4.4	7	92	7	55	25	28	34	12	1.92
58492--58538	8	6.5	8	79	20	59	21	25	38	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58492--58538	15	3.3	15	91	5	71	21	25	38	14	1.92
58499--58543	13	3.3	13	90	6	63	17	24	42	15	1.88
58520--58584	18	3.6	18	95	0	112	9	18	52	20	1.72
70385--70437	26	2.0	25	82	7	61	62	3	3	30	1.30
70563--70627	19	3.6	17	70	22	51	66	1	3	29	1.16
70565--70619	19	2.9	18	73	19	58	63	1	3	30	1.22
70565--70612	20	2.6	18	78	18	53	60	0	4	35	1.16
80284--80505	64	3.5	63	86	3	268	31	20	18	29	1.96
80846--80917	27	2.6	29	89	10	123	43	16	20	19	1.89
87256--87479	64	3.5	64	87	2	272	33	21	16	28	1.95
87256--87497	128	1.9	128	83	8	312	34	21	16	28	1.94
87771--87818	24	2.0	24	84	8	62	33	4	20	41	1.72
87785--87818	12	2.8	12	90	0	59	32	5	23	38	1.79
87836--87909	29	2.6	29	93	2	132	44	14	21	18	1.86
87849--87896	15	3.3	15	70	5	53	50	12	20	16	1.78
93612--93656	16	2.8	16	96	0	81	35	13	17	33	1.89
93708--93773	27	2.4	27	97	0	123	27	18	16	37	1.92
96435--96528	46	2.0	46	80	8	102	43	4	2	50	1.33
96428--96496	33	2.2	32	82	10	79	49	2	0	47	1.16
97362--97416	2	28.0	2	96	3	103	49	0	0	50	1.00
101434--101484	3	17.3	3	88	11	79	66	0	0	33	0.92
101434--101484	17	2.9	18	91	8	79	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101434--101484	20	2.5	20	96	3	93	66	0	0	33	0.92
103429--103473	14	3.1	15	81	9	58	35	0	0	64	0.94

Tables:   1

The End!