Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004703.1 Hibiscus syriacus cultivar Beakdansim tig00010570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62881

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1906--1940
14
2.5
13
86
13
52
22
2
11
62
1.41
4516--4574
23
2.6
21
72
15
55
40
1
1
55
1.20
11294--11383
45
2.0
45
97
0
171
35
12
17
34
1.87
12148--12179
15
2.1
16
94
5
57
34
0
9
56
1.32
12449--12509
24
2.5
25
81
7
72
32
3
1
62
1.21
13264--13298
18
2.0
17
94
5
61
42
0
5
51
1.25
18255--18309
22
2.5
22
90
0
74
40
29
7
23
1.81
18271--18317
22
2.1
22
96
0
85
38
31
8
21
1.83
18627--18663
17
2.2
17
100
0
74
24
37
10
27
1.88
22823--22885
22
2.9
22
90
0
99
38
26
9
25
1.87
24468--24497
2
15.5
2
93
6
53
50
0
0
50
1.00
25943--26115
82
2.0
84
91
5
278
30
1
10
56
1.44
26961--27014
21
2.8
20
78
10
58
25
5
0
68
1.11
27032--27056
12
2.1
12
100
0
50
32
0
0
68
0.90
27825--27857
14
2.3
15
89
5
50
81
3
15
0
0.80
30021--30077
21
2.8
21
86
2
89
24
14
29
31
1.94
29963--30170
99
2.1
99
96
0
380
26
12
25
35
1.92
30152--30190
20
1.9
20
84
5
51
25
17
33
23
1.96
31423--31461
19
2.1
18
85
4
51
53
10
0
35
1.35
39663--39704
2
21.0
2
95
0
75
47
0
2
50
1.14
47276--47329
20
2.7
20
85
2
63
20
25
24
29
1.99
47294--47337
21
2.1
21
83
8
54
20
27
27
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47686--47745
30
2.0
30
93
6
104
33
6
16
43
1.74
47825--47920
21
4.6
20
83
11
122
21
35
20
21
1.96
47948--48017
20
3.5
20
82
3
86
21
28
21
28
1.99
47965--48026
21
3.0
21
79
9
74
20
27
27
24
1.99
47948--48026
41
1.9
41
87
5
115
21
27
24
26
1.99
49290--49337
19
2.5
20
86
3
62
50
6
14
29
1.67
50499--50557
29
2.0
31
90
6
95
35
5
16
42
1.71
50637--50735
21
4.8
20
82
13
119
23
34
20
22
1.97
50637--50848
20
10.7
20
79
13
147
22
31
20
25
1.98

Tables:   1

The End!