Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004704.1 Hibiscus syriacus cultivar Beakdansim tig00010573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 116691
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:14602 original size:55 final size:55
Alignment explanation
Indices: 14530--15319 Score: 436
Period size: 51 Copynumber: 15.1 Consensus size: 55
14520 AGGATAAATG
* * ** *
14530 AGACTTGAAACATCTTCAAATGACGAG-CCTGCTCCCTATTCCTTCAG-GAAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCC-GCTCTCTATTCCTTCAGAG-AGTATA
** * * * * *
14585 AGACTCGAGCAATCTTCATAAAATGTGTCTGCTCTCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* *
14640 AGACTTGAACAATCTTCAATAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTAT-
1 AGACTCGAAAAATCTTCAA-AAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
14695 AGAACTCGAAAAATCTTCAATAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTAT-
1 AG-ACTCGAAAAATCTTCAA-AAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* *
14751 AGAACTCGAAAAATCTTCAATAAAC-AGGTCCGCTCCCTATTCCTTCAGAGAGTATA
1 AG-ACTCGAAAAATCTTCAAAAAACGA-GTCCGCTCTCTATTCCTTCAGAGAGTATA
* * * **
14807 GGACTC----AATCTTTAACAAACTTGTCCGCTC-CTTATTCCTTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTC-TATTCCTTCAGAGAGTATA
* ** ** * *
14858 GGACTC----AATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* ** ** * *
14909 GGACTC----AATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * ** ** *
14960 GGACTC----AATCCTCAACGAACTTGTCCGCTCTCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* ** ** *
15011 GGACTC----AATCTTCAACGAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* ** ** * *
15062 GGACTC----AATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * ** * *
15113 GGACTC----AATCTTCAACAAACTTGTCCGCTCCCTATTCATTC--AGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* ** ** * *
15162 GGACTC-----ATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* * ** * *
15212 GGACTC----AATCTTCAACAAACTTGTCCGCTCCCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
* ** ** *
15263 GGACTC----AATCTTCAACGAACTTGTCCGCTCTCTATTCATTCAGAGAGTATA
1 AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
*
15314 GGACTC
1 AGACTC
15320 AATCTTCAAC
Statistics
Matches: 682, Mismatches: 41, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
48 33 0.05
49 14 0.02
50 15 0.02
51 421 0.62
52 1 0.00
54 1 0.00
55 92 0.13
56 105 0.15
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (55 bp):
AGACTCGAAAAATCTTCAAAAAACGAGTCCGCTCTCTATTCCTTCAGAGAGTATA
Found at i:14843 original size:51 final size:51
Alignment explanation
Indices: 14610--15329 Score: 1005
Period size: 51 Copynumber: 13.9 Consensus size: 51
14600 TCATAAAATG
* * * ** *
14610 TGTCTGCTCTCTATTCATTCAGAGAGTATAAGACTTGAACAATCTTCAATAAAACG
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGAC-T---CAATCTTCAA-CGAACT
* * * * ** *
14666 AGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAAAATCTTCAATAAAACG
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTC----AATCTTCAA-CGAACT
* * * * ** *
14722 AGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAAAATCTTCAATAAACA
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTC----AATCTTCAACGAACT
* * * *
14777 GGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTTAACAAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
* *
14828 TGTCCGCTCCTTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
14879 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
14930 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCCTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
14981 TGTCCGCTCTCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
15032 TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
15083 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACAAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
15134 TGTCCGCTCCCTATTCATTC--AGAGTATAGGACTC-ATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
15182 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACAAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
15233 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
15284 TGTCCGCTCTCTATTCATTCAGAGAGTATAGGACTCAATCTTCAAC
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAAC
15330 AAACGAATTT
Statistics
Matches: 627, Mismatches: 30, Indels: 19
0.93 0.04 0.03
Matches are distributed among these distances:
48 33 0.05
49 14 0.02
50 14 0.02
51 433 0.69
52 1 0.00
55 38 0.06
56 94 0.15
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
Found at i:15427 original size:252 final size:251
Alignment explanation
Indices: 14667--15351 Score: 850
Period size: 252 Copynumber: 2.7 Consensus size: 251
14657 AATAAAACGA
* * * * * ** *
14667 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAAAATCTTCAATAAAACGAGTCCGCTCT
1 GTCCGCTCCCTATTCATTCAGAGAGTATAGGACTC----AATCCTCAA-CAAACTTGTCCGCTCC
* * ** ** *
14732 CTATTCCTTCAGAGAGTATAGAACTCGAAAAATCTTCAATAAACAGGTCCGCTCCCTATTCCTTC
61 CTATTCATTCAGAGAGTATAGGACTC----AATCTTCAACGAACTTGTCCGCTCCCTATTCATTC
* *** * *
14797 AGAGAGTATAGGACTCAATCTTTAACAAACTTGTCCGCTC-CTTATTCCTTCAGAGAGTATAGGA
122 AGAGAGTATAGGACTCAATCTTCAACAAACGAATCCGCTCAC-TACTCATTCAGAGAGTATAGGA
* ** *
14861 CTCAATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACG
186 CTCAATCTTCAACAAAC-TGTCAACTCCCTATTCATTC--AGAGTATAGCACTC-ATCTTCAACG
14926 AACTT
247 AACTT
* *
14931 GTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCCTCAACGAACTTGTCCGCTCTCTATT
1 GTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCCTCAACAAACTTGTCCGCTCCCTATT
*
14996 CATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCCTATTCCTTCAGAGAGTAT
66 CATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTAT
* *** * *
15061 AGGACTCAATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTC
131 AGGACTCAATCTTCAACAAACGAATCCGCTCACTACTCATTCAGAGAGTATAGGACTCAATCTTC
** *
15126 AACAAACTTGTCCGCTCCCTATTCATTCAGAGTATAGGACTCATCTTCAACGAACTT
196 AACAAAC-TGTCAACTCCCTATTCATTCAGAGTATAGCACTCATCTTCAACGAACTT
*
15183 GTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACAAACTTGTCCGCTCCCTATT
1 GTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCCTCAACAAACTTGTCCGCTCCCTATT
*
15248 CATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCTCTATTCATTCAGAGAGTAT
66 CATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTAT
**
15313 AGGACTCAATCTTCAACAAACGAATTTGCTTCACTACTC
131 AGGACTCAATCTTCAACAAACGAATCCGC-TCACTACTC
15352 TTTTGTGAAG
Statistics
Matches: 388, Mismatches: 31, Indels: 15
0.89 0.07 0.03
Matches are distributed among these distances:
252 163 0.42
253 21 0.05
255 127 0.33
256 1 0.00
259 36 0.09
260 8 0.02
264 32 0.08
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (251 bp):
GTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCCTCAACAAACTTGTCCGCTCCCTATT
CATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCCTATTCATTCAGAGAGTAT
AGGACTCAATCTTCAACAAACGAATCCGCTCACTACTCATTCAGAGAGTATAGGACTCAATCTTC
AACAAACTGTCAACTCCCTATTCATTCAGAGTATAGCACTCATCTTCAACGAACTT
Found at i:16505 original size:17 final size:16
Alignment explanation
Indices: 16471--16614 Score: 105
Period size: 16 Copynumber: 8.6 Consensus size: 16
16461 CCTCCTTTTA
*
16471 TTTCTCTTTTTTCATT
1 TTTCTCTTTTTTCTTT
*
16487 TTTCTCTTTTTTCATT
1 TTTCTCTTTTTTCTTT
*
16503 TTTCAT-TTTTTTCCTT
1 TTTC-TCTTTTTTCTTT
16519 TTTC-CATTTTCTTCTTT
1 TTTCTC-TTTT-TTCTTT
*
16536 TTCTTTCTTTTTGT-TTT
1 TT-TCTCTTTTT-TCTTT
*
16553 TTCCATCATTTTTTCTTT
1 TTTC-TC-TTTTTTCTTT
*
16571 TTTCTCATTTTTCTTCT
1 TTTCTCTTTTTTCTT-T
* *
16588 TTTTTCATTTTTCGTTT
1 TTTCTCTTTTTTC-TTT
*
16605 TTTTTCTTTT
1 TTTCTCTTTT
16615 ATTTCTTCTT
Statistics
Matches: 107, Mismatches: 9, Indels: 23
0.77 0.06 0.17
Matches are distributed among these distances:
16 45 0.42
17 42 0.39
18 19 0.18
19 1 0.01
ACGTcount: A:0.06, C:0.18, G:0.01, T:0.75
Consensus pattern (16 bp):
TTTCTCTTTTTTCTTT
Found at i:16545 original size:10 final size:9
Alignment explanation
Indices: 16525--16624 Score: 59
Period size: 9 Copynumber: 11.1 Consensus size: 9
16515 CCTTTTTCCA
16525 TTTTCTTCT
1 TTTTCTTCT
16534 TTTTCTTTCT
1 TTTTC-TTCT
*
16544 TTTTGTT-T
1 TTTTCTTCT
* * *
16552 TTTCCATCA
1 TTTTCTTCT
16561 TTTT-TTCT
1 TTTTCTTCT
16569 TTTT-TCTCAT
1 TTTTCT-TC-T
16579 TTTTCTTC-
1 TTTTCTTCT
16587 TTTT-TTCAT
1 TTTTCTTC-T
*
16596 TTTTCGTTTT
1 TTTTC-TTCT
16606 TTTTCTT-T
1 TTTTCTTCT
16614 TATTTCTTCT
1 T-TTTCTTCT
16624 T
1 T
16625 CAAGCGAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
7 3 0.04
8 18 0.25
9 24 0.34
10 23 0.32
11 3 0.04
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (9 bp):
TTTTCTTCT
Found at i:16565 original size:19 final size:17
Alignment explanation
Indices: 16543--16621 Score: 63
Period size: 17 Copynumber: 4.5 Consensus size: 17
16533 TTTTTCTTTC
*
16543 TTTTTGTTTTTTCCATCAT
1 TTTTTCTTTTTT-C-TCAT
16562 TTTTTCTTTTTTCTCA-
1 TTTTTCTTTTTTCTCAT
*
16578 TTTTTCTTCTTTTTTCA-
1 TTTTTCTT-TTTTCTCAT
* *
16595 TTTTTCGTTTTTTTTCTT
1 TTTTTC-TTTTTTCTCAT
16613 TTATTTCTT
1 TT-TTTCTT
16622 CTTCAAGCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
16 8 0.15
17 23 0.43
18 7 0.13
19 15 0.28
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTCTTTTTTCTCAT
Found at i:16614 original size:7 final size:7
Alignment explanation
Indices: 16475--16607 Score: 58
Period size: 7 Copynumber: 18.1 Consensus size: 7
16465 CTTTTATTTC
16475 TCTTTTT
1 TCTTTTT
16482 TCATTTTT
1 TC-TTTTT
16490 CTCTTTTT
1 -TCTTTTT
*
16498 TCATTTT
1 TCTTTTT
16505 TCATTTTTT
1 TC--TTTTT
*
16514 TCCTTTT
1 TCTTTTT
**
16521 TCCATTT
1 TCTTTTT
*
16528 TCTTCTT
1 TCTTTTT
*
16535 T-TTCTT
1 TCTTTTT
16541 TCTTTTT
1 TCTTTTT
16548 GT-TTTTT
1 -TCTTTTT
16555 CCATCATTTTT
1 ---TC-TTTTT
16566 TCTTTTT
1 TCTTTTT
**
16573 TC-TCAT
1 TCTTTTT
*
16579 T-TTTCT
1 TCTTTTT
16585 TCTTTTT
1 TCTTTTT
*
16592 TCATTTT
1 TCTTTTT
16599 TCGTTTTT
1 TC-TTTTT
16607 T
1 T
16608 TTCTTTTATT
Statistics
Matches: 97, Mismatches: 16, Indels: 25
0.70 0.12 0.18
Matches are distributed among these distances:
6 12 0.12
7 53 0.55
8 18 0.19
9 9 0.09
11 5 0.05
ACGTcount: A:0.06, C:0.18, G:0.02, T:0.74
Consensus pattern (7 bp):
TCTTTTT
Found at i:26328 original size:44 final size:45
Alignment explanation
Indices: 26264--26360 Score: 142
Period size: 44 Copynumber: 2.2 Consensus size: 45
26254 TTGTTATCCA
*
26264 CAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATACTTATT
1 CAAAAATAAATCCTAACCGCATGATATCTAATTCGCATACTTATT
* * *
26309 CAAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCTTGTT
1 CAAAAATAAATCCTAACCGCATGATATCTAATTCGCATACTTATT
26353 CGAAAAAT
1 C-AAAAAT
26361 GAAAATAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
44 32 0.68
45 15 0.32
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (45 bp):
CAAAAATAAATCCTAACCGCATGATATCTAATTCGCATACTTATT
Found at i:30850 original size:23 final size:24
Alignment explanation
Indices: 30815--30863 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
30805 CCACTAGGGG
* *
30815 CTATGAATTTGTCCCGAATGACCA
1 CTATGAATATGTCCCGAAGGACCA
30839 CTATGAA-ATGTCCCGAAGGACCA
1 CTATGAATATGTCCCGAAGGACCA
30862 CT
1 CT
30864 GTATGTCCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (24 bp):
CTATGAATATGTCCCGAAGGACCA
Found at i:31648 original size:24 final size:20
Alignment explanation
Indices: 31591--31686 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 20
31581 TTCCCCTTGA
*
31591 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
31611 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
31634 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
*
31655 A-TGCATCGATGCACTCCT-T
1 AGTGCATCGATGCA-TCCTAC
31674 A-TGCATCGATGCA
1 AGTGCATCGATGCA
31687 CTAATTGCAT
Statistics
Matches: 67, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
19 31 0.46
20 14 0.21
21 2 0.03
22 1 0.01
23 4 0.06
24 14 0.21
25 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:31661 original size:19 final size:19
Alignment explanation
Indices: 31637--31688 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
31627 CCTTAACATG
31637 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
31656 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
31675 TGCATCGATGCACT
1 TGCATCGATGCACT
31689 AATTGCATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.31
Consensus pattern (19 bp):
TGCATCGATGCACTCCTTA
Found at i:34999 original size:60 final size:60
Alignment explanation
Indices: 34906--35077 Score: 206
Period size: 60 Copynumber: 2.9 Consensus size: 60
34896 GGAAACAGGG
* * * *
34906 GGAGAATCAAATGCTTGCTTTGCAACATCCTTCTGCTCAGTGTTCTGTTCGTGGGA-AGGA
1 GGAGAATCAAATGCTCGCTTTGCAACATCCTTCTGCTCAGAGTTCTGTTCGTAGGAGA-CA
34966 GGAGAATCAAATGCTCGCTTTGCAACATCCTTCTGCTCTA-AGTTCTGTTCGTAGGAGACA
1 GGAGAATCAAATGCTCGCTTTGCAACATCCTTCTGCTC-AGAGTTCTGTTCGTAGGAGACA
* * * * * *
35026 GGAGAGTCAAATGCCCGCTTTACAACACCCTTCCGCTCGGCA-TTCTGTTCGT
1 GGAGAATCAAATGCTCGCTTTGCAACATCCTTCTGCTCAG-AGTTCTGTTCGT
35078 TTGGCTTCTC
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
60 95 0.97
61 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (60 bp):
GGAGAATCAAATGCTCGCTTTGCAACATCCTTCTGCTCAGAGTTCTGTTCGTAGGAGACA
Found at i:35175 original size:24 final size:24
Alignment explanation
Indices: 35148--35195 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
35138 GGCTTCTGCC
35148 TCGACCAGGACTACAGCTGTAGCT
1 TCGACCAGGACTACAGCTGTAGCT
* * *
35172 TCGACGAGGGCTACGGCTGTAGCT
1 TCGACCAGGACTACAGCTGTAGCT
35196 ACGGCCACGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (24 bp):
TCGACCAGGACTACAGCTGTAGCT
Found at i:35646 original size:33 final size:33
Alignment explanation
Indices: 35518--35648 Score: 154
Period size: 33 Copynumber: 4.0 Consensus size: 33
35508 ACCTCCAGGG
* * * * *
35518 CCACCAAAGCCACCATCCCTAATATCGCCGCGC
1 CCACCAAAGCCACCATCCCTCATACCACCACGT
* * ** *
35551 CCACCAAAACCACCATCTCTTGTACCACCGCGT
1 CCACCAAAGCCACCATCCCTCATACCACCACGT
* *
35584 CCACCGAAGCCACCATCCCTCATTCCACCACGT
1 CCACCAAAGCCACCATCCCTCATACCACCACGT
35617 CCACCAAAGCCACCATCCCTCATACCACCACG
1 CCACCAAAGCCACCATCCCTCATACCACCACG
35649 GCCTCCATTG
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 82 1.00
ACGTcount: A:0.27, C:0.50, G:0.09, T:0.14
Consensus pattern (33 bp):
CCACCAAAGCCACCATCCCTCATACCACCACGT
Found at i:41568 original size:12 final size:12
Alignment explanation
Indices: 41551--41575 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
41541 TTGGGGTGTT
41551 TTGTTGGTTGTA
1 TTGTTGGTTGTA
41563 TTGTTGGTTGTA
1 TTGTTGGTTGTA
41575 T
1 T
41576 CTTATGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (12 bp):
TTGTTGGTTGTA
Found at i:54701 original size:21 final size:22
Alignment explanation
Indices: 54656--54710 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
54646 TTTTATATAT
*
54656 GTGTCTATCCTAAATTTAATTA
1 GTGTCTACCCTAAATTTAATTA
*
54678 GTGTCTACCCTAAATTT-TTTA
1 GTGTCTACCCTAAATTTAATTA
54699 GTG-CTTACCCTA
1 GTGTC-TACCCTA
54711 GATTATCCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 1 0.03
21 13 0.43
22 16 0.53
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (22 bp):
GTGTCTACCCTAAATTTAATTA
Found at i:55337 original size:21 final size:21
Alignment explanation
Indices: 55313--55361 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
55303 TATTTTAATT
* *
55313 AATTAATATATACCAAACATA
1 AATTAACAAATACCAAACATA
* *
55334 AATTTACAAATATCAAACATA
1 AATTAACAAATACCAAACATA
55355 ATATTAA
1 A-ATTAA
55362 AATAATATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (21 bp):
AATTAACAAATACCAAACATA
Found at i:56243 original size:64 final size:63
Alignment explanation
Indices: 56107--56244 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 63
56097 GCACCAAGTG
* * **
56107 TGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTGGTGCATCGATGCATGGTTTG
1 TGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAGGTGCATCGATGCATGG-TAA
** *
56171 TGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGGTGCATGG-AA
1 TGCATCGATGCATCAAATGCATTCGATG-TTTGAAAAATAGCCAG-GTGCATCGATGCATGGTAA
56234 TGCATTCGATG
1 TGCA-TCGATG
56245 TTCAATTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
63 4 0.06
64 41 0.64
65 19 0.30
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (63 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAGGTGCATCGATGCATGGTAA
Found at i:63353 original size:64 final size:64
Alignment explanation
Indices: 63285--63462 Score: 200
Period size: 65 Copynumber: 2.8 Consensus size: 64
63275 GAGCACTTGA
* * *
63285 TGCATCGGTGCACCAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAA-ATAGCATG-
1 TGCATCGATGCATCGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAT-GCA-GA
63348 G
64 G
* ** * *
63349 TGCATCGATGCATGGCTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAG
1 TGCATCGATGCATCGAGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAATATGCAGAG
* * *
63414 TGCATCGATGCATTGAGAGTGCATC-AGTGCATGGAATGCATTCGATGTT
1 TGCATCGATGCATCGAGTGTGCATCGA-TGCATGAAATGCATTCGATGTT
63463 CAATTAATTC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 44 0.46
65 50 0.52
66 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (64 bp):
TGCATCGATGCATCGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATATGCAGAG
Found at i:63436 original size:65 final size:65
Alignment explanation
Indices: 63303--63462 Score: 202
Period size: 65 Copynumber: 2.5 Consensus size: 65
63293 TGCACCAAGT
***
63303 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATAGCATGGTGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCATGGTGCATCGATGCATGGAGA
* * *
63367 GTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCA-GAGTGCATCGATGCATTGA
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATA-GCATG-GTGCATCGATGCATGGA
63430 GA
64 GA
*
63432 GTGCATC-AGTGCATGGAATGCATTCGATGTT
1 GTGCATCGA-TGCATGAAATGCATTCGATGTT
63463 CAATTAATTC
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
64 36 0.43
65 48 0.57
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCATGGTGCATCGATGCATGGAGA
Found at i:64719 original size:26 final size:27
Alignment explanation
Indices: 64690--64744 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
64680 CATTTACGAG
* *
64690 ATATATCTTAAGAATATTC-TAAAATA
1 ATATATATTAAAAATATTCATAAAATA
64716 ATATATATTAAAAATATTCATAAAATA
1 ATATATATTAAAAATATTCATAAAATA
64743 AT
1 AT
64745 CTAGAAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (27 bp):
ATATATATTAAAAATATTCATAAAATA
Found at i:66664 original size:17 final size:17
Alignment explanation
Indices: 66637--66675 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
66627 AATTTACAAT
66637 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
66653 TAATTATAAATAATATC
1 TAATTATAAATAATATC
66670 TAATTA
1 TAATTA
66676 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:69222 original size:37 final size:36
Alignment explanation
Indices: 69147--69222 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
69137 TTTTTATATT
*
69147 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
69183 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
69220 TTT
1 TTT
69223 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:69404 original size:20 final size:20
Alignment explanation
Indices: 69368--69405 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69358 ATCCTATTCC
**
69368 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
69388 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
69406 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:71160 original size:21 final size:21
Alignment explanation
Indices: 71115--71184 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
71105 CGATAGATTA
* * *
71115 TCGCATTGCGAT-TTACATAT
1 TCGCATTGCGATAGTCCAAAT
*
71135 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAAT
*
71156 TCGCATTGCGATAGTCCAAAA
1 TCGCATTGCGATAGTCCAAAT
71177 TCGCATTG
1 TCGCATTG
71185 TGAATCTGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 12 0.28
21 31 0.72
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAAT
Found at i:71604 original size:96 final size:97
Alignment explanation
Indices: 71400--71650 Score: 319
Period size: 96 Copynumber: 2.6 Consensus size: 97
71390 GACGACAAAT
* * * * * * * *
71400 TTTCAAATGAAATTTCAATTATAAAATATAACTTAAGTAATTCTAAAAAAAT-TAAATTAAATTA
1 TTTCAAATAAAATTTGAGTTATAAAATAAAACTCAAATAATTC-AAAAAACTCGAAATTAAATTA
*
71464 GAGGTGAACAAAATTCAATTCAATTCGAAATGA
65 GAGGTGAACAAAATTCAATTCAATTCGAAATAA
*
71497 TTTCAAATAAAATTTGAGTTATAAAATAAAACTCAAATAATTCAAAAAACCTCGAAATTGAATTA
1 TTTCAAATAAAATTTGAGTTATAAAATAAAACTCAAATAATTCAAAAAA-CTCGAAATTAAATTA
**
71562 -AGGTGAAC-AAATTTGATTCAATTCGAAATAA
65 GAGGTGAACAAAATTCAATTCAATTCGAAATAA
* * **
71593 TTTCAAATAAAATTTGAGTTATAAAATAAAAGTCGAATAATTTGAAAAACTCGAAATT
1 TTTCAAATAAAATTTGAGTTATAAAATAAAACTCAAATAATTCAAAAAACTCGAAATT
71651 TATAATAAAT
Statistics
Matches: 136, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
95 9 0.07
96 71 0.52
97 46 0.34
98 10 0.07
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (97 bp):
TTTCAAATAAAATTTGAGTTATAAAATAAAACTCAAATAATTCAAAAAACTCGAAATTAAATTAG
AGGTGAACAAAATTCAATTCAATTCGAAATAA
Found at i:79156 original size:22 final size:21
Alignment explanation
Indices: 79131--79172 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79121 TCGTGAACAT
79131 TCGAGAATACATTCATTTATGA
1 TCGAGAAT-CATTCATTTATGA
* *
79153 TCGATAATCGTTCATTTATG
1 TCGAGAATCATTCATTTATG
79173 TTCGTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (21 bp):
TCGAGAATCATTCATTTATGA
Found at i:80454 original size:21 final size:21
Alignment explanation
Indices: 80406--80475 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
80396 CTCGTCCTCA
*
80406 TCGTTGCCGTCCACGTCATTC
1 TCGTCGCCGTCCACGTCATTC
*
80427 T-GTCGCCGTCCATGTCATTC
1 TCGTCGCCGTCCACGTCATTC
80447 TCGTCGCCGTCCACGTCATTC
1 TCGTCGCCGTCCACGTCATTC
*
80468 TTGTCGCC
1 TCGTCGCC
80476 ACAACTAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 18 0.41
21 26 0.59
ACGTcount: A:0.09, C:0.39, G:0.20, T:0.33
Consensus pattern (21 bp):
TCGTCGCCGTCCACGTCATTC
Found at i:96146 original size:2 final size:2
Alignment explanation
Indices: 96141--96215 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
96131 TTATAATTAT
96141 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96183 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96216 TCCACTAAAA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:97596 original size:64 final size:64
Alignment explanation
Indices: 97517--97654 Score: 161
Period size: 64 Copynumber: 2.2 Consensus size: 64
97507 CGGATTCTAG
* * *
97517 CAGGTCGGGTAAAATCGGATACAGGTCA-AGTCAGGTAAATTTGACACCAGATCCAGATCGGGTT
1 CAGGTCAGGTAAAATCAG-TACAGGTCATAGTCAGGTAAATTTGACACCAGATCCAGATCAGGTT
* * * * ** **
97581 CAGGTCAGGTTAAATCAGTTCGGGTTATTTTCAGGTTGATTTGACACCAGATCCAGATCAGGTT
1 CAGGTCAGGTAAAATCAGTACAGGTCATAGTCAGGTAAATTTGACACCAGATCCAGATCAGGTT
97645 CAGGTCAGGT
1 CAGGTCAGGT
97655 CATTTTCAGT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
63 6 0.10
64 56 0.90
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (64 bp):
CAGGTCAGGTAAAATCAGTACAGGTCATAGTCAGGTAAATTTGACACCAGATCCAGATCAGGTT
Found at i:98385 original size:212 final size:215
Alignment explanation
Indices: 97960--98652 Score: 1064
Period size: 212 Copynumber: 3.3 Consensus size: 215
97950 ATTTAAGAAT
*
97960 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACTCATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* * *
98025 GGATCAAATCAAAATAATTTTTAATTGTGGTGTTGAAATTAATACAAAAAAGTACTAAATTATAC
66 GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATAC-AAAAAGTACTAAATTATAC
* * * *
98090 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAATTAAGTAAAAAGTATGGATCAATTTCATA
130 CCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATA
*
98155 TGCAAATAAAATTTGGAGGAA
195 TGCAAATAAAATTTGGAGGAC
*
98176 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATTAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* *
98241 GGATCAAATTGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAAGTACTAGATTATACC
66 GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAAGTACTAAATTATACC
*
98306 CATTT-AAAAGTTAT-GG-CAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGAT
131 CATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATAT
98368 GCAAATAAAATTTGGAGGAC
196 GCAAATAAAATTTGGAGGAC
* * * *
98388 TAAATTGAACAAATATAAAATAACAAATAAAAAATTAAATAAACTAAACAACACA-A---A--AG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* *
98447 GGATCAAATCGAAATAATTTTAAATTTTGAGGTTGAAATTAATACAAAAATGTACTAAATTATAC
66 GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAA-GTACTAAATTATAC
* * *
98512 TCATTTAAAAATTTATGGGCCAA-TTAATAAATAGAAATAAGTAATAAGTATGAGTCAATTTCAT
130 CCATTTAAAAAGTTATGGGCCAATTTAA-AAATAGAAATAAGTAATAAGTATGGGTCAATTTCAT
*
98576 ATGCAAATAAAATGTGGAGGAC
194 ATGCAAATAAAATTTGGAGGAC
* *
98598 TAAATTGAACAAATATGAAATTAAAAATAAAAATTTTAATAAATTAAACAACACA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACA
98653 AAAGGGATCA
Statistics
Matches: 439, Mismatches: 33, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
206 49 0.11
207 18 0.04
208 9 0.02
209 6 0.01
210 107 0.24
211 1 0.00
212 110 0.25
213 2 0.00
214 9 0.02
215 24 0.05
216 104 0.24
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (215 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAAGTACTAAATTATACC
CATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCATAT
GCAAATAAAATTTGGAGGAC
Found at i:98598 original size:210 final size:209
Alignment explanation
Indices: 97960--98665 Score: 971
Period size: 210 Copynumber: 3.3 Consensus size: 209
97950 ATTTAAGAAT
* * *
97960 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACTCATTGATGAG
1 TAAATTGAACAAATATAAAATAACAAATAAAAATTTAAATAAATTAAACAACA--CA-T-ATAAG
* *
98025 GGATCAAATCAAAATAATTTTTAATTGTG-GTGTTGAAATTAATACAAAAAAGTACTAAATTATA
62 GGATCAAATCGAAATAATTTTAAATTGTGAG-GTTGAAATTAATAC-AAAAAGTACTAAATTATA
* *
98089 CCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAATTAAGTAAAAAGTATGGATCAATTTCAT
125 CCCATTTAAAAAGTTATGGGCCAATT-AAAAATAGAAATAAGTAATAAGTATGG-TCAATTTCAT
*
98154 ATGCAAATAAAATTTGGAGGAA
188 ATGCAAATAAAATTTGGAGGAC
* * * *
98176 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATTAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATAAAATAACAAATAAAAATTTAAATAAATTAAAC-A-ACACA-T-ATAAG
* * *
98241 GGATCAAATTGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAAGTACTAGATTATACC
62 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTATACC
*
98306 CATTT-AAAAGTTAT-GG-CAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGAT
127 CATTTAAAAAGTTATGGGCCAA-TTAAAAATAGAAATAAGTAATAAGTAT-GGTCAATTTCATAT
98368 GCAAATAAAATTTGGAGGAC
190 GCAAATAAAATTTGGAGGAC
* *
98388 TAAATTGAACAAATATAAAATAACAAATAAAAAATTAAATAAACTAAACAACACA-A-AAGGGAT
1 TAAATTGAACAAATATAAAATAACAAATAAAAATTTAAATAAATTAAACAACACATATAAGGGAT
* *
98451 CAAATCGAAATAATTTTAAATTTTGAGGTTGAAATTAATACAAAAATGTACTAAATTATACTCAT
66 CAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAA-GTACTAAATTATACCCAT
*
98516 TTAAAAATTTATGGGCCAATTAATAAATAGAAATAAGTAATAAGTATGAGTCAATTTCATATGCA
130 TTAAAAAGTTATGGGCCAATTAA-AAATAGAAATAAGTAATAAGTATG-GTCAATTTCATATGCA
*
98581 AATAAAATGTGGAGGAC
193 AATAAAATTTGGAGGAC
* *
98598 TAAATTGAACAAATATGAAATTAA-AAATAAAAATTTTAATAAATTAAACAACACA-A-AAGGGA
1 TAAATTGAACAAATAT-AAAATAACAAATAAAAATTTAAATAAATTAAACAACACATATAAGGGA
98660 TCAAAT
65 TCAAAT
98666 ATGAAAAATA
Statistics
Matches: 450, Mismatches: 28, Indels: 30
0.89 0.06 0.06
Matches are distributed among these distances:
206 49 0.11
207 19 0.04
208 8 0.02
209 7 0.02
210 119 0.26
211 7 0.02
212 100 0.22
213 6 0.01
214 9 0.02
215 24 0.05
216 98 0.22
217 1 0.00
218 3 0.01
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (209 bp):
TAAATTGAACAAATATAAAATAACAAATAAAAATTTAAATAAATTAAACAACACATATAAGGGAT
CAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTATACCCATT
TAAAAAGTTATGGGCCAATTAAAAATAGAAATAAGTAATAAGTATGGTCAATTTCATATGCAAAT
AAAATTTGGAGGAC
Found at i:98763 original size:20 final size:20
Alignment explanation
Indices: 98738--98805 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
98728 ACAACTAATA
98738 TATATATATATAATATAAAC
1 TATATATATATAATATAAAC
* *
98758 TATATAGTTTAT-ATATAAAG
1 TATATA-TATATAATATAAAC
* *
98778 TATATGTATTATATATACAAAC
1 TATATATA-TATA-ATATAAAC
98800 TATATA
1 TATATA
98806 GTTTATATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
19 1 0.03
20 21 0.57
21 4 0.11
22 11 0.30
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (20 bp):
TATATATATATAATATAAAC
Found at i:98800 original size:42 final size:44
Alignment explanation
Indices: 98735--98816 Score: 132
Period size: 42 Copynumber: 1.9 Consensus size: 44
98725 AAAACAACTA
*
98735 ATATATATATATATAATATAAACTATATAGTTTATATATAAAGT
1 ATATATATATATATAATACAAACTATATAGTTTATATATAAAGT
*
98779 ATATGTAT-TATAT-ATACAAACTATATAGTTTATATATA
1 ATATATATATATATAATACAAACTATATAGTTTATATATA
98817 TATTATGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 24 0.67
43 5 0.14
44 7 0.19
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.44
Consensus pattern (44 bp):
ATATATATATATATAATACAAACTATATAGTTTATATATAAAGT
Found at i:98812 original size:20 final size:20
Alignment explanation
Indices: 98754--98814 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
98744 TATATAATAT
*
98754 AAACTATATAGTTTATATAT
1 AAACTATATAGTTTATATAC
*
98774 AAAGTATAT-GTATTATATATAC
1 AAACTATATAG--TT-TATATAC
98796 AAACTATATAGTTTATATA
1 AAACTATATAGTTTATATA
98815 TATATTATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 1 0.03
20 14 0.41
21 4 0.12
22 14 0.41
23 1 0.03
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.43
Consensus pattern (20 bp):
AAACTATATAGTTTATATAC
Found at i:98851 original size:27 final size:28
Alignment explanation
Indices: 98811--98871 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
98801 ATATAGTTTA
** *
98811 TATATATATTATGTATAAACTATAGT-C
1 TATATATACCATGTATAAACTATAATAC
98838 TATATATACCATGTATAAACTATAATAC
1 TATATATACCATGTATAAACTATAATAC
98866 TATATA
1 TATATA
98872 GTTTATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 23 0.77
28 7 0.23
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (28 bp):
TATATATACCATGTATAAACTATAATAC
Found at i:99082 original size:51 final size:52
Alignment explanation
Indices: 99011--99132 Score: 183
Period size: 53 Copynumber: 2.3 Consensus size: 52
99001 TATGAAATAT
* * *
99011 ATATATATAAACTATATAGTTTACATGTGACC-TATATATATACTATAGTTG
1 ATATTTATATACTATATAGTTTACATATGACCATATATATATACTATAGTTG
* *
99062 ATATTTATATACTATATAGTTTACATATGACCTATATATATATATTATAGTTT
1 ATATTTATATACTATATAGTTTACATATGACC-ATATATATATACTATAGTTG
99115 ATATTTATATACTATATA
1 ATATTTATATACTATATA
99133 TTATATATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 29 0.45
53 35 0.55
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (52 bp):
ATATTTATATACTATATAGTTTACATATGACCATATATATATACTATAGTTG
Found at i:99101 original size:2 final size:2
Alignment explanation
Indices: 99094--99166 Score: 60
Period size: 2 Copynumber: 35.0 Consensus size: 2
99084 ACATATGACC
* *
99094 TA TA TA TA TA TA T- TA TA GTT TA TA TT TA TA TA CTA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA
*
99136 TA TA TA TA AA CTA TA TA TA CTA TA TA GTA TA
1 TA TA TA TA TA -TA TA TA TA -TA TA TA -TA TA
99167 ATTTACATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
1 2 0.03
2 48 0.83
3 8 0.14
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:99117 original size:20 final size:20
Alignment explanation
Indices: 99094--99389 Score: 100
Period size: 20 Copynumber: 15.3 Consensus size: 20
99084 ACATATGACC
*
99094 TATATATATATATTATAGT-T
1 TATATATATATACTATA-TAT
*
99114 TATATTTATATACTATATAT
1 TATATATATATACTATATAT
*
99134 TATATATATAAACTATATAT
1 TATATATATATACTATATAT
*
99154 ACTATATAGTATAATTTAC-ATATGAAC
1 --TATATA-TAT-A--TACTATAT--AT
* *
99181 TATATATA-AAACCA-A-A-
1 TATATATATATACTATATAT
99197 TA-A-ACTATATACTATAGT-T
1 TATATA-TATATACTATA-TAT
* * *
99216 GATATTTATATACTATATAA
1 TATATATATATACTATATAT
* *
99236 AATA-ATTTATAC--TATAT
1 TATATATATATACTATATAT
*
99253 TACATATA-A-ACTATATA-
1 TATATATATATACTATATAT
*
99270 -ATATATATAAACTATATAT
1 TATATATATATACTATATAT
*
99289 TATATAGT-TCATTAATATATAT
1 TATATA-TAT-A-TACTATATAT
* * * **
99311 AAAATATATAAACTATATGG
1 TATATATATATACTATATAT
*
99331 TATATATA-A-ACTATACAT
1 TATATATATATACTATATAT
* *
99349 TATATATAT-T-TTAT-TAG
1 TATATATATATACTATATAT
99366 TATATATA-A-ACTATATAT
1 TATATATATATACTATATAT
99384 TATATA
1 TATATA
99390 GTTCATTAGT
Statistics
Matches: 203, Mismatches: 38, Indels: 72
0.65 0.12 0.23
Matches are distributed among these distances:
14 1 0.00
15 3 0.01
16 14 0.07
17 22 0.11
18 39 0.19
19 10 0.05
20 70 0.34
21 5 0.02
22 20 0.10
23 3 0.01
24 3 0.01
25 10 0.05
26 2 0.01
27 1 0.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (20 bp):
TATATATATATACTATATAT
Found at i:99150 original size:53 final size:53
Alignment explanation
Indices: 99043--99294 Score: 177
Period size: 53 Copynumber: 4.8 Consensus size: 53
99033 ACATGTGACC
* * *
99043 TATATATATACTATAGTTGATATTTATATACTATATAGTT-TACATATGACCTA
1 TATATATATACTATAGTTGATATTTATATACTATATA-TTATATATATAAACTA
* *
99096 TATATATATATTATAGTTTATATTTATATACTATATATTATATATATAAACTA
1 TATATATATACTATAGTTGATATTTATATACTATATATTATATATATAAACTA
* * * * *
99149 TATATA-CTA-TATAG-T-ATAATTTACATA-T-GA-ACTATATATA-AAACCAAA
1 TATATATATACTATAGTTGAT-ATTTATATACTATATATTATATATATAAA-C-TA
* ** * *
99197 TAAACTATATACTATAGTTGATATTTATATACTATATAAAATA-ATTTATACTA
1 TATA-TATATACTATAGTTGATATTTATATACTATATATTATATATATAAACTA
* * * *
99250 TATTACATATAAACTATA--TAATATATATAAACTATATATTATATA
1 TA-T--ATATATACTATAGTTGATATTTATATACTATATATTATATA
99295 GTTCATTAAT
Statistics
Matches: 156, Mismatches: 26, Indels: 33
0.73 0.12 0.15
Matches are distributed among these distances:
46 3 0.02
47 10 0.06
48 5 0.03
49 5 0.03
50 11 0.07
51 10 0.06
52 13 0.08
53 77 0.49
54 5 0.03
55 16 0.10
56 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.44
Consensus pattern (53 bp):
TATATATATACTATAGTTGATATTTATATACTATATATTATATATATAAACTA
Found at i:99183 original size:34 final size:36
Alignment explanation
Indices: 99120--99188 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 36
99110 AGTTTATATT
*
99120 TATATACTATATATTATATATATAAACTATATATAC
1 TATATACTATATATTATACATATAAACTATATATAC
* *
99156 TATATAGTATA-ATT-TACATATGAACTATATATA
1 TATATACTATATATTATACATATAAACTATATATA
99189 AAACCAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 17 0.57
35 3 0.10
36 10 0.33
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (36 bp):
TATATACTATATATTATACATATAAACTATATATAC
Found at i:99320 original size:60 final size:62
Alignment explanation
Indices: 99256--99382 Score: 177
Period size: 60 Copynumber: 2.1 Consensus size: 62
99246 ACTATATTAC
*
99256 ATATAAACTATATAATATATATAAACTATATA-T-TATATAGTTCATTAATATATATAAAAT
1 ATATAAACTATATAATATATATAAACTATACATTATATATAGTTCATTAATATATATAAAAT
** * * * *
99316 ATATAAACTATATGGTATATATAAACTATACATTATATATATTTTATTAGTATATATAAACT
1 ATATAAACTATATAATATATATAAACTATACATTATATATAGTTCATTAATATATATAAAAT
99378 ATATA
1 ATATA
99383 TTATATAGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 29 0.50
61 1 0.02
62 28 0.48
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (62 bp):
ATATAAACTATATAATATATATAAACTATACATTATATATAGTTCATTAATATATATAAAAT
Found at i:99371 original size:35 final size:34
Alignment explanation
Indices: 99271--99472 Score: 189
Period size: 33 Copynumber: 6.3 Consensus size: 34
99261 AACTATATAA
*
99271 TATATATAAACTATATAT-TATATAGTTCATTAA
1 TATATATAAACTATATATATATATAGTTCATTAG
*
99304 TATATATAAA--ATATATA-A-ACTA--T-A-TGG
1 TATATATAAACTATATATATATA-TAGTTCATTAG
* * *
99331 TATATATAAACTATACATTATATATATTTTATTAG
1 TATATATAAACTATATA-TATATATAGTTCATTAG
99366 TATATATAAACTATATAT-TATATAGTTCATTAG
1 TATATATAAACTATATATATATATAGTTCATTAG
* * *
99399 TATATATAACCTATATA-ATATATAG-ACTATGA-
1 TATATATAAACTATATATATATATAGTTC-ATTAG
* *
99431 TATATAAAAACTATATAT-TATATAGTTCATTAC
1 TATATATAAACTATATATATATATAGTTCATTAG
99464 TATATATAA
1 TATATATAA
99473 CATACTATAT
Statistics
Matches: 138, Mismatches: 15, Indels: 32
0.75 0.08 0.17
Matches are distributed among these distances:
27 11 0.08
28 1 0.01
29 5 0.04
30 3 0.02
31 12 0.09
32 27 0.20
33 59 0.43
34 2 0.01
35 18 0.13
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.43
Consensus pattern (34 bp):
TATATATAAACTATATATATATATAGTTCATTAG
Found at i:99388 original size:60 final size:59
Alignment explanation
Indices: 99256--99382 Score: 157
Period size: 62 Copynumber: 2.1 Consensus size: 59
99246 ACTATATTAC
** *
99256 ATATA-AACTATATAATATATATAAACTATATATTATATAGTTCATTAATATATATAAA
1 ATATATAACTATATGGTATATATAAACTATACATTATATAGTTCATTAATATATATAAA
* * *
99314 ATATATAAACTATATGGTATATATAAACTATACATTATATATATTTTATTAGTATATATAAA
1 ATATAT-AACTATATGGTATATATAAACTATACA-T-TATATAGTTCATTAATATATATAAA
*
99376 CTATATA
1 ATATATA
99383 TTATATAGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 5 0.09
60 24 0.41
61 2 0.03
62 27 0.47
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (59 bp):
ATATATAACTATATGGTATATATAAACTATACATTATATAGTTCATTAATATATATAAA
Found at i:99389 original size:18 final size:18
Alignment explanation
Indices: 99248--99565 Score: 141
Period size: 18 Copynumber: 17.7 Consensus size: 18
99238 TAATTTATAC
*
99248 TATATTACATATAAACTA
1 TATATTATATATAAACTA
*
99266 TATAATATATATAAACTA
1 TATATTATATATAAACTA
99284 TATATTATATAGTTCATTAA-TA
1 TATATTATATA--T-A--AACTA
*
99306 TATATAAAATATATAAACTA
1 TATAT--TATATATAAACTA
**
99326 TATGGTATATATAAACTA
1 TATATTATATATAAACTA
* ***
99344 TACATTATATATATTTTA
1 TATATTATATATAAACTA
*
99362 T-TAGTATATATAAACTA
1 TATATTATATATAAACTA
*
99379 TATATTATATAGT--TC-A
1 TATATTATATA-TAAACTA
* *
99395 T-TAGTATATATAACCTA
1 TATATTATATATAAACTA
*
99412 TATA--ATATATAGACTA
1 TATATTATATATAAACTA
99428 TGATA-TATA-A-AAACTA
1 T-ATATTATATATAAACTA
** *
99444 TATATTATATAGTTCATTA
1 TATATTATATA-TAAACTA
* *
99463 CTATA-TATA-ACATACTA
1 -TATATTATATATAAACTA
* *
99480 TATAGTTTACATATGAACTA
1 TATA--TTATATATAAACTA
* *
99500 TATA-TATA-CTAAAGT-
1 TATATTATATATAAACTA
*
99515 TGATATTTATATATGAACTA
1 T-ATA-TTATATATAAACTA
99535 TAGT-TTATATATAAACTA
1 TA-TATTATATATAAACTA
99553 TATAGTT-TATATA
1 TATA-TTATATATA
99566 CTAACTATAG
Statistics
Matches: 223, Mismatches: 44, Indels: 66
0.67 0.13 0.20
Matches are distributed among these distances:
14 1 0.00
15 12 0.05
16 35 0.16
17 27 0.12
18 90 0.40
19 20 0.09
20 21 0.09
21 2 0.01
22 8 0.04
23 2 0.01
24 5 0.02
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (18 bp):
TATATTATATATAAACTA
Found at i:99448 original size:95 final size:96
Alignment explanation
Indices: 99271--99472 Score: 236
Period size: 95 Copynumber: 2.1 Consensus size: 96
99261 AACTATATAA
*
99271 TATATATAAACTATATATTATATAGTTCATTAATATATATAAAATATATAAACTATATGGTATAT
1 TATATATAAACTATATATTATATAGTTCATTAATATATATAAAATATATAAACTATATGCTATAT
* * *
99336 ATAAACTATACATTATA-TATAT-TTTATTAG
66 ATAAAC-AAACATTATATTATATATTCATTAC
* **
99366 TATATATAAACTATATATTATATAGTTCATTAGTATATATAACCTATAT-AA-TATATAGACTAT
1 TATATATAAACTATATATTATATAGTTCATTAATATATATAAAATATATAAACTATAT-G-CTAT
99429 GATATATAA-AAAC-TATATATTATATAGTTCATTAC
64 -ATATA-AACAAACAT-TATATTATATA-TTCATTAC
99464 TATATATAA
1 TATATATAA
99473 CATACTATAT
Statistics
Matches: 92, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
93 5 0.05
94 4 0.04
95 56 0.61
96 10 0.11
97 2 0.02
98 15 0.16
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.43
Consensus pattern (96 bp):
TATATATAAACTATATATTATATAGTTCATTAATATATATAAAATATATAAACTATATGCTATAT
ATAAACAAACATTATATTATATATTCATTAC
Found at i:99501 original size:20 final size:20
Alignment explanation
Indices: 99476--99594 Score: 80
Period size: 18 Copynumber: 6.4 Consensus size: 20
99466 TATATAACAT
99476 ACTATATAGTTTACATATGA
1 ACTATATAGTTTACATATGA
*
99496 ACTATATA-TATAC-TA--A
1 ACTATATAGTTTACATATGA
* *
99512 AGT-TGATA-TTTATATATGA
1 ACTAT-ATAGTTTACATATGA
* *
99531 AC--TATAGTTTATATATAA
1 ACTATATAGTTTACATATGA
*
99549 ACTATATAGTTTATATACT-A
1 ACTATATAGTTTACATA-TGA
99569 AC--TATAGTTTACATATGA
1 ACTATATAGTTTACATATGA
*
99587 CCTATATA
1 ACTATATA
99595 TATACTATAG
Statistics
Matches: 80, Mismatches: 8, Indels: 22
0.73 0.07 0.20
Matches are distributed among these distances:
15 1 0.01
16 9 0.11
17 6 0.08
18 29 0.36
19 6 0.08
20 28 0.35
21 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (20 bp):
ACTATATAGTTTACATATGA
Found at i:99544 original size:38 final size:38
Alignment explanation
Indices: 99476--99594 Score: 124
Period size: 38 Copynumber: 3.2 Consensus size: 38
99466 TATATAACAT
*
99476 ACTATATAGTTTACATATGAACTATA---TATATACTAA
1 ACTATATAGTTTATATATGAACTATAGTTTATATA-TAA
*
99512 AGT-TGATA-TTTATATATGAACTATAGTTTATATATAA
1 ACTAT-ATAGTTTATATATGAACTATAGTTTATATATAA
* *
99549 ACTATATAGTTTATATACT-AACTATAGTTTACATATGA
1 ACTATATAGTTTATATA-TGAACTATAGTTTATATATAA
*
99587 CCTATATA
1 ACTATATA
99595 TATACTATAG
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
35 17 0.24
36 5 0.07
37 8 0.11
38 39 0.56
39 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (38 bp):
ACTATATAGTTTATATATGAACTATAGTTTATATATAA
Found at i:99591 original size:18 final size:18
Alignment explanation
Indices: 99520--99592 Score: 85
Period size: 18 Copynumber: 3.9 Consensus size: 18
99510 AAAGTTGATA
99520 TTTATATATGAACTATAG
1 TTTATATATGAACTATAG
*
99538 TTTATATATAAACTATATAG
1 TTTATATATGAAC--TATAG
99558 TTTATATACT-AACTATAG
1 TTTATATA-TGAACTATAG
* *
99576 TTTACATATGACCTATA
1 TTTATATATGAACTATA
99593 TATATACTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
17 1 0.02
18 30 0.62
20 16 0.33
21 1 0.02
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.44
Consensus pattern (18 bp):
TTTATATATGAACTATAG
Found at i:100497 original size:45 final size:45
Alignment explanation
Indices: 100446--100548 Score: 197
Period size: 45 Copynumber: 2.3 Consensus size: 45
100436 TGCACAGGTA
100446 GTGCATCGATGCACTCTTTTAATCTAAAAACATCGAATACAATTG
1 GTGCATCGATGCACTCTTTTAATCTAAAAACATCGAATACAATTG
*
100491 GTGCATCGATGCACTCTTTTAATCTAAAAACATCGGATACAATTG
1 GTGCATCGATGCACTCTTTTAATCTAAAAACATCGAATACAATTG
100536 GTGCATCGATGCA
1 GTGCATCGATGCA
100549 TAAGGCATGC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (45 bp):
GTGCATCGATGCACTCTTTTAATCTAAAAACATCGAATACAATTG
Found at i:101602 original size:102 final size:101
Alignment explanation
Indices: 101420--101634 Score: 369
Period size: 102 Copynumber: 2.1 Consensus size: 101
101410 GTCGAGGGTC
*
101420 TATGTGGTCCTTCGGGACATATATGTATTCTTTGAACATGTGTGAAGTCTGGTGAGACACATACT
1 TATGTGGTCCTTCGGGACATATAGGTATTCTTTGAACATGTGTGAAGTCTGGTGAGACACATACT
* *
101485 TGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TGATCCCTAGCATATGTATATGATTCTTAA-GAATGA
101522 TATGTGGTCCTTC-GGACATATAGGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATAGGTATTCTTT-GAACATGTGTGAAGTCTGGTGAGACACATAC
*
101586 TTGATCCCTAGTATATGTATATGATTCTTAAGAATGA
65 TTGATCCCTAGCATATGTATATGATTCTTAAGAATGA
101623 TATGTGGTCCTT
1 TATGTGGTCCTT
101635 ATGACATTAT
Statistics
Matches: 108, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
101 36 0.33
102 72 0.67
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (101 bp):
TATGTGGTCCTTCGGGACATATAGGTATTCTTTGAACATGTGTGAAGTCTGGTGAGACACATACT
TGATCCCTAGCATATGTATATGATTCTTAAGAATGA
Found at i:101716 original size:23 final size:23
Alignment explanation
Indices: 101640--101717 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
101630 TCCTTATGAC
* *
101640 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTTCGGTGCA
* * *
101664 ATTCTACGCGGCA-TTCCGGTGCA
1 ATTATATGTGGCACTT-CGGTGCA
101687 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTTCGGTGCA
101710 ATTATATG
1 ATTATATG
101718 AGCTGTGGTG
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.02
23 38 0.86
24 5 0.11
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (23 bp):
ATTATATGTGGCACTTCGGTGCA
Found at i:106476 original size:64 final size:64
Alignment explanation
Indices: 106326--106482 Score: 158
Period size: 64 Copynumber: 2.5 Consensus size: 64
106316 TTGAAGGTGT
*** * *
106326 ATCGATGCACAGGTAGTGCATCGATGCACTCTTTTAATCTAAAAACATCGAATACAATTGGTGC
1 ATCGATGCACAGGTAGTGCATCGATGCACTCCAGTAATCAAAAAACATCGAATACAATTGATGC
* * * ** * *
106390 ATCGATGCATAAGGCA-TACATCGATGCA-TCCCAGTAAT-AAACAAACATCGAATGTATTTTAT
1 ATCGATGCA-CAGGTAGTGCATCGATGCACT-CCAGTAATCAAA-AAACATCGAATACAATTGAT
106452 GC
63 GC
106454 ATCGATGCACAGGTAGTGCATCGATGCAC
1 ATCGATGCACAGGTAGTGCATCGATGCAC
106483 CGAAAGGGAA
Statistics
Matches: 73, Mismatches: 15, Indels: 9
0.75 0.15 0.09
Matches are distributed among these distances:
63 7 0.10
64 62 0.85
65 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (64 bp):
ATCGATGCACAGGTAGTGCATCGATGCACTCCAGTAATCAAAAAACATCGAATACAATTGATGC
Found at i:107487 original size:103 final size:103
Alignment explanation
Indices: 107262--107479 Score: 402
Period size: 103 Copynumber: 2.1 Consensus size: 103
107252 GTCGAGGGTC
*
107262 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATAGGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
107327 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
107365 TATGTAGTCCTTCGGGACATATAGGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATAGGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
107430 TTGATCCCTT-GTATATGTATATGATTCTTAAGGAATGA
66 TTGAT-CCTTGGTATATGTATATGATTCTTAAGGAATGA
107468 TATGTGGTCCTT
1 TATGTGGTCCTT
107480 ATGGACATTA
Statistics
Matches: 111, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
103 107 0.96
104 4 0.04
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATAGGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:107545 original size:23 final size:23
Alignment explanation
Indices: 107489--107563 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
107479 TATGGACATT
* *
107489 ATTATAT--GGCACTACGGTGCA
1 ATTATATGCGGCACTTCAGTGCA
* *
107510 ATTCTACGCGGCA-TTCCAGTGCA
1 ATTATATGCGGCACTT-CAGTGCA
* *
107533 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGCGGCACTTCAGTGCA
107556 ATTATATG
1 ATTATATG
107564 ACCTGTGTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 5 0.12
22 1 0.02
23 34 0.81
24 2 0.05
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (23 bp):
ATTATATGCGGCACTTCAGTGCA
Found at i:112291 original size:64 final size:61
Alignment explanation
Indices: 112146--112299 Score: 166
Period size: 64 Copynumber: 2.5 Consensus size: 61
112136 TTGAAGGTGT
*** ** *
112146 ATCGATGCACAGGTATGCATCGATGCACTCTTTTAATCTAAAACATCGAATGCATTGGTGC
1 ATCGATGCACAGGTATGCATCGATGCACTCCAGTAATAAAAAACATCGAATGCATTGATGC
* * * *
112207 ATCGATGCATAAGGCATGCATCGATGCA-TCCCAGTAATAAACAAACATCGAATGTATTTTATGC
1 ATCGATGCA-CAGGTATGCATCGATGCACT-CCAGTAATAAA-AAACATCGAATGCA-TTGATGC
112271 ATCGATGCACAGGTAGTGCATCGATGCAC
1 ATCGATGCACAGGTA-TGCATCGATGCAC
112300 CGATAGGGAA
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
61 10 0.13
62 22 0.29
63 17 0.23
64 26 0.35
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (61 bp):
ATCGATGCACAGGTATGCATCGATGCACTCCAGTAATAAAAAACATCGAATGCATTGATGC
Found at i:113342 original size:22 final size:22
Alignment explanation
Indices: 113305--113367 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
113295 ACATTATTAT
* *
113305 GGCACTACGATGCAATTCTACGC
1 GGCACTCCG-TGCAATTATACGC
* *
113328 GGCACTCCGTGCAATTATATGT
1 GGCACTCCGTGCAATTATACGC
*
113350 GGCACTTCGGTGCAATTA
1 GGCAC-TCCGTGCAATTA
113368 ATGCTGTGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 15 0.44
23 19 0.56
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (22 bp):
GGCACTCCGTGCAATTATACGC
Found at i:113365 original size:23 final size:23
Alignment explanation
Indices: 113304--113367 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
113294 GACATTATTA
* * *
113304 TGGCACTACGATGCAATTCTACG
1 TGGCACTTCGGTGCAATTATACG
* * *
113327 CGGCAC-TCCGTGCAATTATATG
1 TGGCACTTCGGTGCAATTATACG
113349 TGGCACTTCGGTGCAATTA
1 TGGCACTTCGGTGCAATTA
113368 ATGCTGTGGT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
22 16 0.50
23 16 0.50
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTATACG
Found at i:114239 original size:22 final size:22
Alignment explanation
Indices: 114201--114282 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 22
114191 GTGTTACAAC
*
114201 CTATATA-TATATATATACATA
1 CTATATATTATATATATATATA
*
114222 CTATA-ATT-TATATTTATATA
1 CTATATATTATATATATATATA
114242 CTATATATTATATATATA-AT-
1 CTATATATTATATATATATATA
114262 CTATATA-TACTATATAGTATA
1 CTATATATTA-TATATA-TATA
114283 ATTTACATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
19 2 0.04
20 29 0.56
21 13 0.25
22 8 0.15
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.48
Consensus pattern (22 bp):
CTATATATTATATATATATATA
Found at i:114259 original size:18 final size:18
Alignment explanation
Indices: 114204--114541 Score: 100
Period size: 18 Copynumber: 18.7 Consensus size: 18
114194 TTACAACCTA
*
114204 TATATATATATATACATAC
1 TATATAT-TATATATATAC
114223 TATA-ATTTATATTTATATAC
1 TATATA-TTATA--TATATAC
*
114243 TATATATTATATATATAA
1 TATATATTATATATATAC
* *
114261 TCTATA-TATACTATATAG
1 TATATATTATA-TATATAC
*
114279 TATA-ATT-TACATATTAAC
1 TATATATTATATATA-T-AC
* * * *
114297 TATATATAAAACCAAATAAAC
1 TATATAT--TA-TATATATAC
* *
114318 TATATACTATAGT-TGATATT
1 TATATATTATA-TAT-ATA-C
* * *
114338 TATATACTATATAAAATAATT
1 TATATATTATAT-ATAT-A-C
*
114359 TATACTATTATATATAAAC
1 TATA-TATTATATATATAC
*
114378 --TATATTATATAT-TTC
1 TATATATTATATATATAC
*
114393 -AT-TA-TATATATAAAC
1 TATATATTATATATATAC
* *
114408 TATATAATATATATAAAC
1 TATATATTATATATATAC
** *
114426 TATATGGTATATATAAAC
1 TATATATTATATATATAC
* *
114444 TATACATTATATATAT-T
1 TATATATTATATATATAC
* *
114461 TGAT-TAGTATATATAAAC
1 T-ATATATTATATATATAC
114479 TATATATT-TATAGT-T-C
1 TATATATTATATA-TATAC
* *
114495 -AT-TAGTATATATAAAC
1 TATATATTATATATATAC
* * *
114511 TATATAGTATATGTAAAC
1 TATATATTATATATATAC
114529 TATATATTATATA
1 TATATATTATATA
114542 GTTCATTAGT
Statistics
Matches: 241, Mismatches: 44, Indels: 69
0.68 0.12 0.19
Matches are distributed among these distances:
14 11 0.05
15 10 0.04
16 18 0.07
17 30 0.12
18 103 0.43
19 11 0.05
20 29 0.12
21 18 0.07
22 7 0.03
23 4 0.02
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (18 bp):
TATATATTATATATATAC
Found at i:114507 original size:2 final size:2
Alignment explanation
Indices: 114202--114490 Score: 70
Period size: 2 Copynumber: 142.0 Consensus size: 2
114192 TGTTACAACC
* * *
114202 TA TA TA TA TA TA TA TA CA TA CTA TA -A TT TA TA TT TA TA TA CTA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA
* *
114245 TA TA T- TA TA TA TA TA -A TC TA TA TA TA CTA TA TA GTA TA -A TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
* * * * *
114286 TA CA TA T- TA -A CTA TA TA TA -A AA CCA AA TA AA CTA TA TA CTA
1 TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA -TA TA TA -TA
* * *
114327 TA GT- TGA TA TT TA TA TA CTA TA TA -A AA TA -A TT TA TA CTA T-
1 TA -TA T-A TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA
* * *
114367 TA TA TA TA AA CTA TA T- TA TA TA TT TCA T- TA TA TA TA TA AA CTA
1 TA TA TA TA TA -TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA -TA
* * * *
114410 TA TA -A TA TA TA TA AA CTA TA TGG TA TA TA TA AA CTA TA CA T-
1 TA TA TA TA TA TA TA TA -TA TA T-A TA TA TA TA TA -TA TA TA TA
* * *
114451 TA TA TA TA TT TGA T- TA GTA TA TA TA AA CTA TA TA TT TA TA
1 TA TA TA TA TA T-A TA TA -TA TA TA TA TA -TA TA TA TA TA TA
114491 GTTCATTAGT
Statistics
Matches: 208, Mismatches: 42, Indels: 74
0.64 0.13 0.23
Matches are distributed among these distances:
1 16 0.08
2 163 0.78
3 29 0.14
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:114544 original size:51 final size:50
Alignment explanation
Indices: 114465--114574 Score: 184
Period size: 51 Copynumber: 2.2 Consensus size: 50
114455 TATATTTGAT
114465 TAGTATATATAAACTATATATTTATAGTTCATTAGTATATATAAACTATA
1 TAGTATATATAAACTATATATTTATAGTTCATTAGTATATATAAACTATA
* *
114515 TAGTATATGTAAACTATATATTATATAGTTCATTAGTATATATAACCTATA
1 TAGTATATATAAACTATATATT-TATAGTTCATTAGTATATATAAACTATA
*
114566 TAATATATA
1 TAGTATATA
114575 GACTATGGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
50 21 0.38
51 34 0.62
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (50 bp):
TAGTATATATAAACTATATATTTATAGTTCATTAGTATATATAAACTATA
Found at i:114554 original size:33 final size:32
Alignment explanation
Indices: 114515--114624 Score: 123
Period size: 33 Copynumber: 3.4 Consensus size: 32
114505 ATAAACTATA
*
114515 TAGTATATGTAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTC-T
* * *
114548 TAGTATATATAACCTATATAATATATAG-ACT
1 TAGTATATATAAACTATATATTATATAGTTCT
* *
114579 ATGGTATATACAAACTATATATTATATAGTTCGT
1 -TAGTATATATAAACTATATATTATATAGTTC-T
*
114613 TATTATATATAA
1 TAGTATATATAA
114625 CATACTATAT
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
31 1 0.02
32 25 0.40
33 35 0.56
34 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.43
Consensus pattern (32 bp):
TAGTATATATAAACTATATATTATATAGTTCT
Found at i:114574 original size:18 final size:18
Alignment explanation
Indices: 114396--114574 Score: 110
Period size: 18 Copynumber: 10.4 Consensus size: 18
114386 ATATTTCATT
114396 ATATATATAAACTATATA
1 ATATATATAAACTATATA
*
114414 ATATATATAAACTATATG
1 ATATATATAAACTATATA
* *
114432 GTATATATAAACTATACA
1 ATATATATAAACTATATA
* **
114450 TTATATAT-ATTTGAT-TA
1 ATATATATAAACT-ATATA
*
114467 GTATATATAAACTATAT-
1 ATATATATAAACTATATA
**
114484 AT-T-TAT-AGTTCAT-TA
1 ATATATATAAACT-ATATA
*
114499 GTATATATAAACTATATA
1 ATATATATAAACTATATA
* *
114517 GTATATGTAAACTATAT-
1 ATATATATAAACTATATA
**
114534 AT-TATAT-AGTTCAT-TA
1 ATATATATAAACT-ATATA
* *
114550 GTATATATAACCTATATA
1 ATATATATAAACTATATA
114568 ATATATA
1 ATATATA
114575 GACTATGGTA
Statistics
Matches: 121, Mismatches: 26, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
14 3 0.02
15 9 0.07
16 9 0.07
17 26 0.21
18 74 0.61
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (18 bp):
ATATATATAAACTATATA
Found at i:114586 original size:83 final size:85
Alignment explanation
Indices: 114415--114606 Score: 239
Period size: 83 Copynumber: 2.3 Consensus size: 85
114405 AACTATATAA
* * *
114415 TATATATAAACTATATGGTATATATAAACTATACATTATATATATTTGATTAGTATATATAAACT
1 TATATATAAACTATATAGTATATATAAACTATACATTATATATAGTTCATTAGTATATATAAACT
* *
114480 ATATATTTATAGTTCATTAG
66 ATATATATATAGCTCATTAG
* * *
114500 TATATATAAACTATATAGTATATGTAAACTATATA-T-TATATAGTTCATTAGTATATATAACCT
1 TATATATAAACTATATAGTATATATAAACTATACATTATATATAGTTCATTAGTATATATAAACT
*
114563 ATATAATATATAGACT-A-TGG
66 ATAT-ATATATAG-CTCATTAG
* *
114583 TATATACAAACTATATATTATATA
1 TATATATAAACTATATAGTATATA
114607 GTTCGTTATT
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
83 51 0.55
84 9 0.10
85 33 0.35
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.43
Consensus pattern (85 bp):
TATATATAAACTATATAGTATATATAAACTATACATTATATATAGTTCATTAGTATATATAAACT
ATATATATATAGCTCATTAG
Found at i:114704 original size:18 final size:18
Alignment explanation
Indices: 114671--114735 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
114661 AAAGTTGATA
*
114671 TTTATATATGAACTATAGT
1 TTTACATAT-AACTATAGT
114690 TTTACATATAACTATA-T
1 TTTACATATAACTATAGT
*
114707 AGTTTATATACTAACTATAG-
1 --TTTACATA-TAACTATAGT
114727 TTTACATAT
1 TTTACATAT
114736 GACCTGTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.05
18 14 0.36
19 15 0.38
20 8 0.21
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.46
Consensus pattern (18 bp):
TTTACATATAACTATAGT
Found at i:114735 original size:20 final size:21
Alignment explanation
Indices: 114681--114735 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
114671 TTTATATATG
114681 AACTATAGTTTTACATATAACT
1 AACTATAG-TTTACATATAACT
114703 -A-TATAGTTT--ATAT-ACT
1 AACTATAGTTTACATATAACT
114719 AACTATAGTTTACATAT
1 AACTATAGTTTACATAT
114736 GACCTGTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 3 0.10
17 5 0.17
18 8 0.28
19 3 0.10
20 9 0.31
21 1 0.03
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (21 bp):
AACTATAGTTTACATATAACT
Found at i:114768 original size:30 final size:29
Alignment explanation
Indices: 114732--114788 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
114722 TATAGTTTAC
*
114732 ATATGACCTGTATATATACTATATAATTCA
1 ATATGACCTATATATATA-TATATAATTCA
114762 ATATGACCTATATATATATATATAATT
1 ATATGACCTATATATATATATATAATT
114789 TATATTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (29 bp):
ATATGACCTATATATATATATATAATTCA
Found at i:114815 original size:15 final size:16
Alignment explanation
Indices: 114202--114826 Score: 68
Period size: 18 Copynumber: 37.0 Consensus size: 16
114192 TGTTACAACC
114202 TATATATA-TATATAT
1 TATATATACTATATAT
* * *
114217 ACATACTATAATTTATAT
1 -TATA-TATACTATATAT
114235 T-TATATACTATATAT
1 TATATATACTATATAT
*
114250 TATATATA-TA-AT-C
1 TATATATACTATATAT
*
114263 TATATATACTATATAG
1 TATATATACTATATAT
*
114279 TATAATTTAC-ATATTAACT
1 TAT-ATATACTATA-T-A-T
* * *
114298 ATATATAAAACCAAATA-
1 -TATAT-ATACTATATAT
*
114315 AACTATATACTATAGTTGAT
1 TA-TATATACTATA--T-AT
* *
114335 ATTTATATACTATATAA
1 -TATATATACTATATAT
* *
114352 AATA-AT-TTATACTAT
1 TATATATACTATA-TAT
*
114367 TATATATA-AACTATAT
1 TATATATACTA-TATAT
*
114383 TATATAT-TTCAT-TAT
1 TATATATACT-ATATAT
*
114398 ATATATAAACTATATAAT
1 -TATATATACTATAT-AT
* *
114416 ATATATAAACTATATGGT
1 -TATATATACTATAT-AT
* *
114434 ATATATAAACTATACAT
1 -TATATATACTATATAT
*
114451 TATATATA-TTTGATTAGT
1 TATATATACTAT-A-TA-T
*
114469 ATATATAAACTATATAT
1 -TATATATACTATATAT
*
114486 T-TATAGTTC-AT-TAGT
1 TATATA-TACTATATA-T
*
114501 ATATATAAACTATATAGT
1 -TATATATACTATATA-T
* *
114519 ATATGTAAACTATATAT
1 -TATATATACTATATAT
* *
114536 TATATAGTTC-AT-TAG
1 TATATA-TACTATATAT
*
114551 TATATATAACCTATATAA
1 TATATAT-A-CTATATAT
* *
114569 TATATAGACTATGGTA-
1 TATATATACTAT-ATAT
* *
114585 TATACAAACTATATAT
1 TATATATACTATATAT
*
114601 TATATAGTTCGT-TATTAT
1 TATATA-TAC-TATA-TAT
*
114619 ATATAACATACTATATAGTT
1 -TAT-ATATACTATATA--T
* *
114639 TACATATGAATATATA-
1 TATATAT-ACTATATAT
* *
114655 TATACTAAAGT-TGATATT
1 TATA-TATACTAT-ATA-T
*
114673 TATATATGAACTATAGTTT
1 TATATAT--ACTATA-TAT
*
114692 TACATATAACTATATAGT
1 TATATAT-ACTATATA-T
114710 T-TATATACTA-ACTA-
1 TATATATACTATA-TAT
114724 TAGT-T-TAC-ATATGACCT
1 TA-TATATACTATAT-A--T
114741 GTATATATACTATATAAT
1 -TATATATACTATAT-AT
114759 TCA-ATATGACCTATATAT
1 T-ATATAT-A-CTATATAT
* *
114777 ATATATATAATTTATAT
1 -TATATATACTATATAT
114794 T-TATATACTATATAT
1 TATATATACTATATAT
*
114809 TATTATAAAACTATATAT
1 TA-TAT-ATACTATATAT
114827 ACTATATAGT
Statistics
Matches: 448, Mismatches: 76, Indels: 168
0.65 0.11 0.24
Matches are distributed among these distances:
13 10 0.02
14 17 0.04
15 60 0.13
16 102 0.23
17 62 0.14
18 114 0.25
19 52 0.12
20 29 0.06
21 2 0.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (16 bp):
TATATATACTATATAT
Found at i:114938 original size:9 final size:9
Alignment explanation
Indices: 114926--114958 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
114916 TATTATATTA
114926 TATATAAAC
1 TATATAAAC
114935 TATATAATA-
1 TATATAA-AC
114944 TATATAAAC
1 TATATAAAC
114953 TATATA
1 TATATA
114959 TTATATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.05
9 20 0.91
10 1 0.05
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (9 bp):
TATATAAAC
Found at i:114945 original size:18 final size:18
Alignment explanation
Indices: 114919--115210 Score: 162
Period size: 18 Copynumber: 17.2 Consensus size: 18
114909 TAATTTATAT
*
114919 TATATTATATATAAACTA
1 TATAGTATATATAAACTA
*
114937 TATAATATATATAAACTA
1 TATAGTATATATAAACTA
**
114955 TATA-T-TATAT-AGTTCA
1 TATAGTATATATAAACT-A
114971 T-TAGTATATATAAACTA
1 TATAGTATATATAAACTA
*
114988 TATGGTATATATAAACTA
1 TATAGTATATATAAACTA
* * **
115006 TACATTATATAT-ATTTGA
1 TATAGTATATATAAACT-A
115024 T-TAGTATATATAAACTA
1 TATAGTATATATAAACTA
* **
115041 TCTA-T-TATAT-AGTTCA
1 TATAGTATATATAAACT-A
115057 T-TAGTATATATAAACTA
1 TATAGTATATATAAACTA
*
115074 TATAGTATATGTAAACTA
1 TATAGTATATATAAACTA
**
115092 TATA-T-TATAT-AGTTCA
1 TATAGTATATATAAACT-A
*
115108 T-TAGTATATATAACCTA
1 TATAGTATATATAAACTA
*
115125 TATAG--TATATAGAC--
1 TATAGTATATATAAACTA
* *
115139 TATGGTATATACAAACTA
1 TATAGTATATATAAACTA
**
115157 TATA-T-TATAT-AGTTCA
1 TATAGTATATATAAACT-A
* *
115173 T-TACTATATATAAATTA
1 TATAGTATATATAAACTA
*
115190 TATAGCATATAT-AACTA
1 TATAGTATATATAAACTA
115207 TATA
1 TATA
115211 TTGAAAATTA
Statistics
Matches: 209, Mismatches: 38, Indels: 55
0.69 0.13 0.18
Matches are distributed among these distances:
14 4 0.02
15 16 0.08
16 44 0.21
17 52 0.25
18 93 0.44
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (18 bp):
TATAGTATATATAAACTA
Found at i:114979 original size:51 final size:50
Alignment explanation
Indices: 114924--115212 Score: 200
Period size: 51 Copynumber: 5.7 Consensus size: 50
114914 TATATTATAT
*
114924 TATATATAAACTATATAATATATATAAACTATATATTATATAGTTCATTAG
1 TATATATAAACTATATAGTATATATAAACTATATATTATATAGTT-ATTAG
* * *
114975 TATATATAAACTATATGGTATATATAAACTATACATTATATATATTTGATTAG
1 TATATATAAACTATATAGTATATATAAACTATATA-T-TATATAGTT-ATTAG
* * ** * **
115028 TATATATAAACTATCTATTATATAGTTCATTAGTATA-TATA-AACTATATAG
1 TATATATAAACTATATAGTATATA-TAAACTA-TATATTATATAGTTAT-TAG
* * ** * **
115079 TATATGTAAACTATATATTATATAGTTCATTAGTATA-TATA-ACCTA-TA-
1 TATATATAAACTATATAGTATATA-TAAACTA-TATATTATATAGTTATTAG
* * * *
115127 TAGTATATAGAC--TATGGTATATACAAACTATATATTATATAGTTCATTAC
1 TA-TATATAAACTATATAGTATATATAAACTATATATTATATAGTT-ATTAG
* *
115177 TATATATAAATTATATAGCATATAT-AACTATATATT
1 TATATATAAACTATATAGTATATATAAACTATATATT
115213 GAAAATTATT
Statistics
Matches: 193, Mismatches: 32, Indels: 27
0.77 0.13 0.11
Matches are distributed among these distances:
45 4 0.02
46 7 0.04
47 11 0.06
48 3 0.02
49 18 0.09
50 15 0.08
51 89 0.46
52 5 0.03
53 34 0.18
54 4 0.02
55 3 0.02
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (50 bp):
TATATATAAACTATATAGTATATATAAACTATATATTATATAGTTATTAG
Found at i:115017 original size:53 final size:51
Alignment explanation
Indices: 114924--115051 Score: 175
Period size: 53 Copynumber: 2.5 Consensus size: 51
114914 TATATTATAT
*
114924 TATATATAAACTATATAATATATATAAACTATATATTATATAGTTCATTAG
1 TATATATAAACTATATAATATATATAAACTATACATTATATAGTTCATTAG
** * *
114975 TATATATAAACTATATGGTATATATAAACTATACATTATATATATTTGATTAG
1 TATATATAAACTATATAATATATATAAACTATACA-T-TATATAGTTCATTAG
* *
115028 TATATATAAACTATCTATTATATA
1 TATATATAAACTATATAATATATA
115052 GTTCATTAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 32 0.48
52 1 0.01
53 34 0.51
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (51 bp):
TATATATAAACTATATAATATATATAAACTATACATTATATAGTTCATTAG
Found at i:115031 original size:35 final size:34
Alignment explanation
Indices: 114992--115083 Score: 118
Period size: 33 Copynumber: 2.7 Consensus size: 34
114982 AAACTATATG
* *
114992 GTATATATAAACTATAC-ATTATATATATTTGATTA
1 GTATATATAAACTATACTA-T-TATATAGTTCATTA
115027 GTATATATAAACTAT-CTATTATATAGTTCATTA
1 GTATATATAAACTATACTATTATATAGTTCATTA
*
115060 GTATATATAAACTATA-TAGTATAT
1 GTATATATAAACTATACTATTATAT
115084 GTAAACTATA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
33 34 0.65
34 2 0.04
35 16 0.31
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.45
Consensus pattern (34 bp):
GTATATATAAACTATACTATTATATAGTTCATTA
Found at i:115037 original size:86 final size:84
Alignment explanation
Indices: 114942--115167 Score: 303
Period size: 86 Copynumber: 2.7 Consensus size: 84
114932 AACTATATAA
*
114942 TATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATATGGTATATATAAACTAT
1 TATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTAT
* *
115007 ACATTATATATATTTGATTAG
66 ACA-T-TATATAGTTCATTAG
* *
115028 TATATATAAACTATCTATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAACTAT
1 TATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTAT
*
115093 ATATTATATAGTTCATTAG
66 ACATTATATAGTTCATTAG
* * * * * *
115112 TATATATAACCTATATAGTATATAG-AC-TATGGTATATACAAACTATATATTATATA
1 TATATATAAACTATATATTATATAGTTCAT-TAGTATATATAAACTATATAGTATATA
115168 GTTCATTACT
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
82 1 0.01
83 24 0.19
84 35 0.28
85 1 0.01
86 64 0.51
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (84 bp):
TATATATAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTAT
ACATTATATAGTTCATTAG
Found at i:115113 original size:33 final size:33
Alignment explanation
Indices: 115076--115193 Score: 141
Period size: 33 Copynumber: 3.6 Consensus size: 33
115066 ATAAACTATA
*
115076 TAGTATATGTAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* * *
115109 TAGTATATATAACCTATATAGTATATAG-AC-T
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
115140 ATGGTATATACAAACTATATATTATATAGTTCAT
1 -TAGTATATATAAACTATATATTATATAGTTCAT
* *
115174 TACTATATATAAATTATATA
1 TAGTATATATAAACTATATA
115194 GCATATATAA
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
31 1 0.01
32 25 0.36
33 42 0.61
34 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (33 bp):
TAGTATATATAAACTATATATTATATAGTTCAT
Found at i:115374 original size:58 final size:58
Alignment explanation
Indices: 115306--115419 Score: 187
Period size: 59 Copynumber: 2.0 Consensus size: 58
115296 ATTGAATAAA
115306 TTTTAAATATGAAGCTTAAATTAATA-ATTGTAAT-ATTAAATTTGGACTAAATTGATT
1 TTTTAAATATGAAGCTTAAATTAATATATTG-AATCATTAAATTTGGACTAAATTGATT
*
115363 TTTTGAAATATGAAGCTTAAATTAATATATTGCATCATTAAATTTGGACTAAATTGA
1 TTTT-AAATATGAAGCTTAAATTAATATATTGAATCATTAAATTTGGACTAAATTGA
115420 ACAAATTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
57 4 0.08
58 24 0.45
59 25 0.47
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.42
Consensus pattern (58 bp):
TTTTAAATATGAAGCTTAAATTAATATATTGAATCATTAAATTTGGACTAAATTGATT
Found at i:115830 original size:93 final size:91
Alignment explanation
Indices: 115645--115834 Score: 213
Period size: 93 Copynumber: 2.0 Consensus size: 91
115635 TATCCATTTA
* * * * **
115645 TCCCCAAAAGCCTCTTTTGATCTTCAAAAACACCTAAACCAAATCATTTTCGTGTTTTTTCGATC
1 TCCCCAAAACCCTCATTTGATCTTCAAAAACACCTAAACCAAACCATTATCAAGTTTTTTCGATC
**
115710 AAACACCCAAATTTCTTCATCCAGTTCT
66 AAACACCCAAAAATCTTCAT-C-GTTCT
*
115738 TCCCCAAAACCCTCATTTGATCTTCAAAAACACCTAAACACAAACCA-TATCAAGTTTATTTTGA
1 TCCCCAAAACCCTCATTTGATCTTCAAAAACACCTAAAC-CAAACCATTATCAAGTTT-TTTCGA
* *
115802 TCAAGCACCCACAAAATCATTCGT-GTTCT
64 TCAAACACCCA-AAAATC-TTCATCGTTCT
115831 TCCC
1 TCCC
115835 TAAATCCTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
93 53 0.65
94 21 0.26
95 4 0.05
96 4 0.05
ACGTcount: A:0.33, C:0.30, G:0.06, T:0.31
Consensus pattern (91 bp):
TCCCCAAAACCCTCATTTGATCTTCAAAAACACCTAAACCAAACCATTATCAAGTTTTTTCGATC
AAACACCCAAAAATCTTCATCGTTCT
Found at i:115949 original size:29 final size:29
Alignment explanation
Indices: 115917--115986 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 29
115907 CAATTTTTTC
115917 AACCCTAACCACTACTGTTCATCTTCCCT
1 AACCCTAACCACTACTGTTCATCTTCCCT
*
115946 AACCTTAACCACTACTGTTCATCTTCCCT
1 AACCCTAACCACTACTGTTCATCTTCCCT
115975 AACCCCTAACCA
1 AA-CCCTAACCA
115987 AACCTAACCA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 30 0.79
30 8 0.21
ACGTcount: A:0.27, C:0.41, G:0.03, T:0.29
Consensus pattern (29 bp):
AACCCTAACCACTACTGTTCATCTTCCCT
Found at i:116129 original size:19 final size:20
Alignment explanation
Indices: 116088--116130 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
116078 ACCCAAACTC
*
116088 AAACCTCAAACTGAGACCCT
1 AAACCTCAAACTGAAACCCT
* *
116108 AAACCT-AAACTTAAACCTT
1 AAACCTCAAACTGAAACCCT
116127 AAAC
1 AAAC
116131 TATTCGAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.47, C:0.30, G:0.05, T:0.19
Consensus pattern (20 bp):
AAACCTCAAACTGAAACCCT
Found at i:116361 original size:2 final size:2
Alignment explanation
Indices: 116354--116378 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
116344 TATATGTTTG
116354 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
116379 CTGGTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:116479 original size:30 final size:31
Alignment explanation
Indices: 116377--116516 Score: 207
Period size: 31 Copynumber: 4.6 Consensus size: 31
116367 TATATATATA
116377 TACTGGTTTATTGTTGTTGATGTAAATGATG
1 TACTGGTTTATTGTTGTTGATGTAAATGATG
*
116408 TACTGGTTTATTGATGTTGATGTAAATGATG
1 TACTGGTTTATTGTTGTTGATGTAAATGATG
*
116439 TATTGG-TTATTGTTG-TGATGTAAATGATG
1 TACTGGTTTATTGTTGTTGATGTAAATGATG
* * *
116468 TACTGGTTTATTGCTGTTGATGT-TATTATG
1 TACTGGTTTATTGTTGTTGATGTAAATGATG
116498 TACTGGTTTATTG-TGTTGA
1 TACTGGTTTATTGTTGTTGA
116517 AACTAACCAT
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
29 25 0.25
30 34 0.34
31 41 0.41
ACGTcount: A:0.21, C:0.04, G:0.26, T:0.49
Consensus pattern (31 bp):
TACTGGTTTATTGTTGTTGATGTAAATGATG
Found at i:116509 original size:60 final size:62
Alignment explanation
Indices: 116377--116516 Score: 216
Period size: 60 Copynumber: 2.3 Consensus size: 62
116367 TATATATATA
116377 TACTGGTTTATTGTTGTTGATGTAAATGATGTACTGGTTTATTGATGTTGATGTAAATGATG
1 TACTGGTTTATTGTTGTTGATGTAAATGATGTACTGGTTTATTGATGTTGATGTAAATGATG
* * * *
116439 TATTGG-TTATTGTTG-TGATGTAAATGATGTACTGGTTTATTGCTGTTGATGT-TATTATG
1 TACTGGTTTATTGTTGTTGATGTAAATGATGTACTGGTTTATTGATGTTGATGTAAATGATG
116498 TACTGGTTTATTG-TGTTGA
1 TACTGGTTTATTGTTGTTGA
116517 AACTAACCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
59 12 0.17
60 45 0.63
61 9 0.13
62 5 0.07
ACGTcount: A:0.21, C:0.04, G:0.26, T:0.49
Consensus pattern (62 bp):
TACTGGTTTATTGTTGTTGATGTAAATGATGTACTGGTTTATTGATGTTGATGTAAATGATG
Done.