genome.fa.s4706.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004706.1 Hibiscus syriacus cultivar Beakdansim tig00010576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124733

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315--359	23	2.0	23	86	0	63	26	26	24	22	2.00
327--635	147	2.1	144	92	4	523	33	20	18	27	1.96
2029--2187	63	2.5	62	82	7	178	27	20	18	33	1.96
5024--5333	147	2.1	146	96	0	575	34	21	17	26	1.96
6727--6887	64	2.5	63	84	8	191	27	21	18	33	1.96
9191--9414	44	5.0	45	87	1	319	28	22	16	32	1.96
9466--9572	36	2.9	36	83	1	142	28	14	8	48	1.72
11292--11415	42	3.0	42	95	2	216	20	19	23	36	1.95
11292--11401	21	5.4	19	76	14	103	20	19	25	35	1.95
11311--11415	21	5.1	21	76	13	119	20	20	21	37	1.95
12112--12223	19	5.4	21	68	17	83	38	23	17	20	1.93
12109--12242	42	3.2	42	92	2	227	37	23	17	20	1.94
12131--12248	21	5.7	21	68	11	73	37	24	18	19	1.94
12109--12384	42	6.4	42	77	16	205	34	21	21	22	1.97
12218--12311	46	2.0	46	95	0	170	34	20	23	22	1.97
12236--12313	20	3.6	20	69	24	68	35	17	23	23	1.95
12351--12405	21	2.6	21	91	5	85	32	27	20	20	1.97
13209--13258	21	2.4	21	89	0	73	30	26	20	24	1.98
13869--14132	140	1.9	140	84	0	357	32	14	13	39	1.85
14605--16433	428	4.3	426	79	7	1747	38	13	9	38	1.77
20983--21028	20	2.3	20	100	0	92	41	8	8	41	1.67
28141--28178	17	2.2	17	95	0	67	21	47	21	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31233--31277	21	2.1	21	83	0	54	31	31	24	13	1.93
32057--32153	30	3.2	30	89	2	142	20	19	27	31	1.97
35378--35422	21	2.1	21	83	0	54	31	31	24	13	1.93
36149--36214	31	2.1	31	83	5	80	30	19	18	31	1.96
36210--36298	30	3.0	30	90	1	117	21	21	25	31	1.98
41755--41805	26	2.0	26	88	7	77	17	43	23	15	1.88
45907--45967	31	2.0	31	87	9	90	29	1	11	57	1.44
47582--47623	21	2.0	22	85	4	59	30	11	9	47	1.72
48739--48793	22	2.5	22	96	0	101	32	23	9	34	1.86
49955--50002	7	6.9	7	95	0	87	12	27	0	60	1.32
49948--50002	14	3.9	14	90	0	83	10	25	0	63	1.27
49941--50005	28	2.3	28	89	0	103	9	23	0	67	1.19
51081--51218	29	4.8	29	70	0	114	22	21	13	42	1.87
51071--51218	58	2.6	58	81	2	172	21	20	14	43	1.88
54878--54951	29	2.6	29	84	0	94	24	16	17	41	1.89
58123--58174	27	2.0	26	84	3	68	21	19	17	42	1.89
58665--58814	58	2.6	58	79	2	149	23	17	15	44	1.86
58665--58819	29	5.3	29	79	4	125	23	16	16	43	1.88
78981--79022	22	1.9	22	90	0	66	26	28	14	30	1.95
85346--85378	16	2.1	16	94	0	57	60	0	6	33	1.21
95643--95715	36	2.0	36	87	10	105	49	0	2	47	1.15
101462--101579	60	2.0	59	86	8	168	34	13	3	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101555--101621	31	2.2	31	91	0	107	35	23	4	35	1.76
103185--103259	31	2.4	31	90	0	123	22	18	20	38	1.93
103928--103972	23	2.0	23	95	0	81	55	17	8	17	1.67
104479--104508	3	10.0	3	100	0	60	0	33	0	66	0.92
114062--114099	20	1.9	19	89	5	58	23	21	26	28	1.99

Tables:   1

The End!