genome.fa.s4707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004707.1 Hibiscus syriacus cultivar Beakdansim tig00010584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64162

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107--146	13	3.1	14	86	10	50	42	2	0	55	1.13
2392--2441	26	1.9	26	88	8	75	66	4	12	18	1.39
7188--7224	18	2.1	18	89	0	56	21	32	35	10	1.88
8049--8097	26	1.9	26	87	4	73	65	6	10	18	1.43
9040--9085	18	2.6	18	83	10	58	41	0	2	56	1.11
9896--9934	18	2.2	18	85	0	51	43	20	28	7	1.79
10111--10144	17	2.0	17	100	0	68	17	58	5	17	1.57
14794--14818	6	4.2	6	100	0	50	16	16	32	36	1.90
15640--15690	20	2.5	20	93	6	86	49	11	19	19	1.79
17058--17118	30	2.0	30	90	0	95	13	19	32	34	1.90
17815--18175	174	2.1	173	95	0	641	40	4	18	36	1.73
18852--19245	28	14.4	27	74	13	222	47	4	4	43	1.43
18846--19198	42	8.6	41	78	9	228	46	4	4	43	1.46
18867--18954	27	3.2	27	88	1	122	47	5	4	42	1.47
18855--19054	55	3.7	55	73	10	153	48	5	4	43	1.43
19177--19256	8	11.4	7	70	19	60	51	2	1	45	1.22
18853--19246	14	28.9	14	70	14	171	47	4	4	43	1.43
18963--19284	108	3.0	105	76	11	305	47	4	4	42	1.47
22508--22552	17	2.6	17	96	3	81	31	20	22	26	1.98
23708--23834	31	4.1	31	78	9	141	30	18	20	30	1.96
23822--23890	30	2.3	30	89	0	102	24	21	23	30	1.99
26379--26404	6	4.3	6	100	0	52	34	15	34	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29815--29886	33	2.2	33	92	0	117	15	38	23	22	1.92
30019--30043	10	2.5	10	100	0	50	20	36	28	16	1.93
32314--32379	26	2.5	26	79	13	73	74	3	6	16	1.15
32376--32470	35	2.6	34	77	15	84	66	3	3	27	1.22
32525--32575	2	25.5	2	95	0	93	49	0	0	50	1.00
32971--33010	12	3.6	11	87	9	55	65	5	5	25	1.34
33026--33071	21	2.2	21	88	7	67	67	2	0	30	1.03
33064--33131	23	2.9	22	85	10	82	64	0	8	26	1.22
33004--33151	58	2.5	56	75	16	142	66	1	8	24	1.27
33684--33788	37	2.8	37	91	0	165	29	14	15	40	1.86
34518--35455	106	8.9	106	88	2	1307	24	18	23	33	1.97
35948--35981	18	1.9	17	94	5	59	52	0	11	35	1.38
36168--36244	22	3.5	22	87	0	118	22	14	27	36	1.92
36861--36914	14	3.8	14	80	20	67	0	11	5	83	0.80
36862--36914	11	4.5	11	77	15	52	0	11	5	83	0.81
36847--36883	20	1.9	20	84	15	51	2	8	5	83	0.88
38172--38200	15	2.0	15	93	6	51	55	13	13	17	1.70
38445--38477	15	2.2	15	100	0	66	15	24	33	27	1.95
38462--38514	18	2.7	19	77	14	54	22	24	28	24	2.00
44323--44351	15	2.0	15	93	6	51	55	13	13	17	1.70
44595--44626	15	2.2	15	94	5	57	15	25	31	28	1.96
44611--44659	19	2.7	18	78	6	55	22	22	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49691--49760	12	5.5	12	74	15	61	75	0	4	20	0.96
49693--49774	14	5.9	15	72	22	56	75	1	3	19	1.02
49705--49768	14	4.8	13	79	9	67	78	1	3	17	0.96
49691--49774	26	3.2	25	79	17	73	75	1	3	20	1.03
49693--49829	69	2.0	70	81	7	163	70	2	4	22	1.16
50068--50160	2	46.5	2	97	0	177	49	1	0	49	1.07
50365--50405	11	3.6	11	87	6	55	65	4	4	24	1.32
51074--51178	37	2.8	37	86	0	147	30	14	15	40	1.87
55178--55247	20	3.5	20	86	1	88	38	24	14	22	1.91
55216--55263	19	2.5	19	100	0	96	35	22	10	31	1.88
55589--55647	15	3.9	15	80	8	66	44	6	16	32	1.74
55633--55679	20	2.3	20	96	0	85	44	6	17	31	1.73
55996--56144	25	5.9	25	71	17	103	51	2	1	44	1.21
56671--56753	39	2.1	39	90	0	130	49	19	13	18	1.79
57049--57185	63	2.2	62	85	6	181	49	17	1	31	1.56
58532--58627	21	4.6	20	78	13	88	22	16	34	26	1.95
58532--58631	42	2.4	42	80	9	114	23	16	35	26	1.95
59025--59074	21	2.4	21	86	0	82	34	28	16	22	1.95
60762--60816	20	2.8	20	86	8	69	49	20	18	12	1.79
60813--60875	20	3.2	20	88	2	92	12	15	23	47	1.80
61126--61183	22	2.7	22	73	5	66	27	10	39	22	1.86
61867--61904	20	2.0	19	90	10	60	47	5	23	23	1.72

Tables:   1

The End!