Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004708.1 Hibiscus syriacus cultivar Beakdansim tig00010590_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95833

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2064--2126
23
2.7
23
87
0
81
38
15
17
28
1.91
4356--4429
24
3.1
24
84
5
80
58
16
12
13
1.64
4387--4430
23
1.9
23
95
0
79
63
15
6
13
1.49
4598--4647
14
3.6
14
88
0
73
54
26
10
10
1.65
4868--4937
37
1.9
36
91
8
115
31
12
21
34
1.91
5026--5075
23
2.2
23
85
0
64
34
16
4
46
1.65
5741--5807
10
6.7
10
78
0
80
47
0
19
32
1.50
5741--5810
20
3.5
20
96
0
122
47
0
18
34
1.49
7250--7537
113
2.6
112
93
1
488
47
13
13
25
1.79
7435--7629
91
2.1
92
96
0
356
47
14
15
23
1.82
7563--8369
182
4.4
182
89
0
1218
44
12
15
28
1.82
8397--8446
25
2.0
25
100
0
100
12
8
20
60
1.57
9589--9616
5
5.6
5
100
0
56
21
60
17
0
1.36
14019--14058
21
2.0
21
90
5
64
25
17
17
40
1.91
20570--20680
45
2.5
44
83
1
141
28
27
18
25
1.98
21491--21542
20
2.7
19
85
5
61
25
21
19
34
1.96
23619--23673
21
2.5
22
83
11
69
32
14
16
36
1.89
23619--23673
22
2.5
22
85
8
69
32
14
16
36
1.89
23724--23762
20
1.9
21
84
5
53
28
15
10
46
1.78
29072--29098
4
6.8
4
100
0
54
77
0
0
22
0.76
29211--29256
3
15.7
3
95
4
85
69
0
0
30
0.89
29374--29429
29
1.9
29
85
0
76
48
5
16
30
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29811--29852
22
2.0
21
95
4
75
80
7
9
2
0.97
31281--31411
67
2.0
67
90
3
210
40
14
15
29
1.87
32376--32410
2
17.5
2
93
0
61
45
0
2
51
1.16
32687--32724
20
1.9
20
88
0
58
50
0
0
50
1.00
36271--36316
24
1.9
24
90
0
74
39
10
0
50
1.38
40137--42045
175
11.0
175
81
12
2428
33
10
15
40
1.81
40137--41875
515
3.4
515
92
5
2747
33
10
15
40
1.81
42438--42475
18
2.1
18
85
9
51
47
0
0
52
1.00
44076--44211
13
10.5
13
69
15
77
47
6
2
43
1.41
44070--44131
32
2.0
33
84
15
87
50
1
1
46
1.20
44091--44223
13
10.2
13
68
15
78
48
7
2
42
1.44
44371--44413
19
2.4
18
88
7
61
41
0
32
25
1.56
44381--44425
19
2.3
19
88
3
63
44
0
33
22
1.53
44655--44705
6
8.5
6
91
0
66
0
29
50
19
1.48
44685--44797
10
11.3
10
75
14
81
0
13
47
38
1.49
44663--44805
6
24.2
6
81
13
127
0
16
48
34
1.51
44818--47268
4
616.5
4
94
1
4306
25
1
24
48
1.62
47356--47388
2
17.0
2
93
6
59
48
0
0
51
1.00
47448--47491
14
3.1
14
83
0
52
50
18
0
31
1.47
47980--48025
15
3.1
15
87
0
65
50
10
2
36
1.50
48133--48201
7
9.9
7
80
0
75
46
31
1
20
1.60
48100--48193
14
6.8
14
79
6
75
47
28
1
22
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48126--48204
21
3.8
21
77
12
81
46
29
1
22
1.60
48365--48411
14
3.7
14
71
26
50
51
4
0
44
1.21
48363--48412
23
2.1
24
96
3
93
48
4
0
48
1.20
58744--58774
14
2.2
14
100
0
62
32
9
45
12
1.75
61864--61901
2
19.0
2
100
0
76
50
0
0
50
1.00
61905--61956
2
26.0
2
100
0
104
50
0
50
0
1.00
62320--62345
11
2.4
11
100
0
52
38
0
0
61
0.96
63544--63574
11
2.8
11
90
0
53
83
0
0
16
0.64
63723--63847
50
2.5
49
81
10
164
16
34
29
20
1.94
69650--69982
111
3.0
111
96
0
594
44
11
7
36
1.70
70816--70848
16
2.0
17
94
5
59
78
0
9
12
0.95
72526--73495
84
11.7
84
76
5
893
24
20
24
30
1.98
72546--73488
165
5.7
162
81
5
926
24
19
24
31
1.98
72711--73472
248
3.1
248
89
0
1141
24
19
24
30
1.98
72722--73495
164
4.7
164
81
5
465
24
19
24
31
1.98
76383--76432
24
2.1
24
85
7
66
60
14
2
24
1.45
86336--86385
24
2.1
24
85
7
66
60
14
2
24
1.45
89287--89320
17
2.0
17
100
0
68
41
17
17
23
1.90
89604--89638
16
2.1
17
94
5
63
85
0
8
5
0.73
89612--89649
12
3.2
12
88
3
51
84
0
7
7
0.79
92375--92437
33
1.9
33
83
0
81
7
22
19
50
1.72
95119--95158
18
2.2
18
100
0
80
30
17
10
42
1.82

Tables:   1

The End!