Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004709.1 Hibiscus syriacus cultivar Beakdansim tig00010601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61388

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1430--1470
18
2.3
19
80
20
52
68
9
0
21
1.18
3369--3442
38
1.9
38
86
0
103
60
12
10
16
1.58
4706--4742
2
18.5
2
100
0
74
51
0
0
48
1.00
4947--4987
2
21.5
2
90
9
68
51
0
0
48
1.00
4947--4989
15
2.9
15
92
0
77
51
0
0
48
1.00
8934--8961
6
4.7
6
100
0
56
64
0
0
35
0.94
10288--10328
21
1.9
22
95
5
75
53
12
14
19
1.72
12532--12596
21
3.1
21
80
6
69
40
15
29
15
1.88
12630--12695
33
2.0
33
90
0
105
28
0
48
22
1.51
14470--14517
19
2.6
19
93
3
80
31
2
10
56
1.45
14641--15977
196
6.8
197
95
3
2373
36
15
16
31
1.90
14641--15977
389
3.4
393
95
3
2358
36
15
16
31
1.90
17385--18267
183
4.8
183
95
0
1567
35
14
15
34
1.88
18945--19009
25
2.6
25
80
0
85
35
9
13
41
1.77
19231--19277
21
2.2
22
77
11
53
38
12
10
38
1.78
19317--19364
23
2.1
22
85
11
62
35
2
18
43
1.62
19548--19598
25
2.0
25
92
0
84
33
7
19
39
1.81
19984--20020
18
2.1
18
89
0
56
32
5
10
51
1.60
19976--20022
24
2.0
24
86
0
67
34
4
14
46
1.64
20281--20359
38
2.1
38
95
0
140
48
20
15
16
1.82
20754--20829
23
3.5
22
78
15
68
39
5
19
35
1.75
20766--20829
23
2.8
23
87
0
92
37
4
20
37
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20766--20838
23
3.2
23
82
7
85
35
4
20
39
1.72
22741--22852
39
2.9
39
82
0
125
31
23
26
18
1.98
23135--23437
106
2.8
109
81
9
311
29
2
12
55
1.51
23135--23449
107
2.9
105
80
10
345
29
2
12
55
1.50
26017--26050
12
2.8
12
90
0
59
44
8
20
26
1.81
28331--28368
19
2.0
20
84
5
51
42
23
5
28
1.76
34419--34803
55
7.0
54
85
7
345
29
26
16
26
1.97
34431--34801
165
2.2
165
80
7
414
29
26
16
26
1.97
34435--34801
110
3.3
110
81
9
417
29
26
16
26
1.97
36139--36186
14
3.7
13
80
5
53
6
18
2
72
1.15
36209--36263
16
3.4
16
80
12
60
5
20
1
72
1.13
36137--36254
44
2.6
43
77
15
114
5
19
1
72
1.13
36223--36269
14
3.1
14
82
17
51
4
23
0
72
1.02
36197--36256
16
3.7
16
79
14
61
5
20
1
73
1.11
45952--46040
45
1.9
47
90
4
146
37
22
11
29
1.89
57793--57837
20
2.1
22
88
8
67
35
11
2
51
1.50
58046--58071
13
2.0
13
100
0
52
23
23
15
38
1.92

Tables:   1

The End!