genome.fa.s471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000471.1 Hibiscus syriacus cultivar Beakdansim tig00000875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155414

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3756--3803	3	16.0	3	82	8	62	35	0	2	62	1.07
3761--3820	24	2.5	24	83	2	77	30	1	3	65	1.19
4083--4118	2	18.0	2	94	0	63	47	0	0	52	1.00
14656--14716	6	10.5	6	75	7	63	77	3	18	1	0.99
15884--16580	106	6.5	106	79	6	758	33	24	18	23	1.96
15884--16580	217	3.2	217	90	1	1071	33	24	18	23	1.96
18522--18590	24	2.8	25	77	4	68	36	23	17	23	1.95
25329--25414	26	3.5	25	75	9	79	26	22	25	25	2.00
25342--25426	24	3.4	24	78	12	82	24	25	25	23	2.00
26102--26159	21	2.8	21	94	0	98	17	31	22	29	1.96
27316--27406	3	31.0	3	76	14	84	28	1	2	68	1.09
27374--27416	19	2.2	19	88	12	61	13	0	4	81	0.84
27320--27416	6	15.3	6	78	14	52	25	1	2	71	1.04
27674--27734	2	30.5	2	100	0	122	49	0	0	50	1.00
29250--29330	30	2.7	30	81	7	92	40	7	23	28	1.81
34146--34206	23	2.7	23	92	0	104	18	27	27	26	1.98
34855--34956	32	3.2	32	81	5	125	18	27	26	27	1.98
34855--34974	64	1.9	64	84	3	161	20	25	24	29	1.99
44706--44751	17	2.6	18	76	13	51	34	6	2	56	1.37
46493--46545	19	2.7	19	74	8	54	18	15	18	47	1.83
48634--48727	21	4.5	21	80	7	84	20	32	20	26	1.97
48634--48727	42	2.2	42	83	3	109	20	32	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50236--50337	29	3.8	29	69	21	105	29	19	26	24	1.98
50215--50329	49	2.3	49	92	0	185	33	19	23	23	1.97
50540--50575	18	2.0	18	94	0	63	16	2	25	55	1.55
53590--53626	16	2.5	15	87	12	58	70	0	2	27	1.01
53761--53812	18	2.7	20	73	11	63	32	11	21	34	1.89
53837--53895	20	2.9	21	82	14	70	30	13	23	32	1.93
53785--53872	40	2.2	40	83	4	106	36	12	23	27	1.91
53845--53937	20	4.6	20	74	12	75	29	11	26	32	1.92
53785--53935	81	1.9	80	83	1	194	33	11	24	30	1.91
54439--54480	13	3.2	13	80	16	50	28	0	4	66	1.12
55655--55699	20	2.3	20	85	14	67	53	11	17	17	1.72
55818--55864	19	2.3	20	78	7	60	53	10	17	19	1.72
57917--57981	21	3.1	21	80	6	69	40	15	29	15	1.88
58013--58072	32	1.9	32	86	3	86	28	0	46	25	1.53
58162--58299	70	2.0	68	97	2	258	44	7	27	20	1.77
58180--58288	34	3.1	34	66	19	98	44	7	28	19	1.77
59900--59943	19	2.4	19	92	3	72	31	2	9	56	1.43
60070--60951	195	4.6	197	93	5	1506	35	15	16	32	1.90
60833--61077	124	2.0	124	94	4	433	32	11	16	39	1.84
60647--61271	316	2.0	312	92	6	1043	34	14	16	34	1.89
60955--61445	194	2.5	193	98	1	950	36	14	16	32	1.89
62887--62983	6	16.3	6	77	2	70	39	7	34	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62902--62987	9	9.7	9	76	2	66	38	5	33	22	1.78
62920--62987	15	4.4	15	85	7	82	36	5	33	23	1.79
62890--62987	12	8.2	12	82	2	90	37	7	33	21	1.81
64443--65249	183	4.4	183	96	0	1431	35	13	16	33	1.89
67690--67743	23	2.3	23	93	0	90	37	7	14	40	1.74
68173--68209	18	2.1	18	89	0	56	32	5	10	51	1.60
68464--68550	39	2.2	39	91	0	147	48	19	13	18	1.81
68971--69045	23	3.5	21	78	10	73	33	4	21	41	1.72
69399--69471	23	3.2	23	88	0	101	34	4	21	39	1.73
68760--69813	431	2.5	430	96	2	1944	40	7	12	38	1.72
70285--70345	26	2.3	27	91	8	99	42	0	1	55	1.09
71802--71834	16	2.1	16	100	0	66	33	30	18	18	1.94
72810--72863	24	2.4	22	80	17	65	35	0	5	59	1.21
78339--78426	46	1.9	46	97	0	167	28	21	12	37	1.90
97279--97647	20	18.5	20	85	4	467	34	26	18	20	1.96
98321--98367	24	2.0	24	87	8	69	25	14	21	38	1.92
98542--98566	12	2.1	12	100	0	50	72	0	28	0	0.86
100870--101177	19	17.4	19	78	17	351	47	18	20	14	1.83
100870--101199	33	9.5	34	79	16	267	46	18	20	14	1.83
100898--101177	52	5.2	53	90	5	351	47	17	21	14	1.83
100937--101177	71	3.4	71	83	11	348	47	17	20	14	1.83
101206--101307	19	5.6	19	82	12	142	15	23	16	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101414--101450	14	2.6	14	91	0	65	45	21	0	32	1.52
101445--101517	12	6.0	12	67	20	53	57	16	1	24	1.47
101431--101503	38	1.9	38	97	0	137	53	16	1	28	1.51
103375--103431	14	3.7	14	77	20	60	45	22	21	10	1.82
103356--103448	33	2.8	33	95	0	168	47	21	20	10	1.80
103319--103453	19	7.6	19	76	16	128	45	23	19	11	1.82
103449--103577	19	7.3	19	75	17	125	8	17	28	45	1.77
103449--103540	33	2.8	33	93	3	150	7	18	28	45	1.76
103620--103998	93	4.1	93	98	1	744	46	18	12	22	1.83
105705--105794	14	5.7	14	74	23	81	42	23	25	8	1.83
105697--105811	33	3.5	33	95	0	212	45	20	24	9	1.81
105704--105816	19	6.8	18	72	23	88	43	22	24	9	1.83
105828--105882	14	3.6	14	73	21	56	9	27	23	40	1.85
106003--106073	33	2.2	33	92	0	115	47	18	22	11	1.80
106255--106309	22	2.5	22	81	0	74	20	16	40	23	1.91
106455--106647	20	9.6	20	82	5	219	19	19	25	35	1.95
106455--106647	60	3.2	60	83	0	251	19	19	25	35	1.95
106703--106754	20	2.6	20	96	0	95	21	13	26	38	1.90
114160--114198	6	6.5	6	100	0	78	17	0	46	35	1.49
117739--117768	14	2.1	14	100	0	60	26	6	20	46	1.75
120050--120079	16	1.9	15	93	6	51	20	30	3	46	1.66
124500--124528	15	1.9	15	100	0	58	62	17	0	20	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133000--133235	118	2.0	119	87	4	343	42	5	13	38	1.68
133234--133290	29	2.0	28	83	13	71	43	3	0	52	1.18
133236--133301	15	4.4	15	73	19	57	42	4	0	53	1.21
133224--133298	23	3.2	24	78	14	77	42	4	0	53	1.19
135690--137200	83	18.3	83	86	2	1916	24	16	23	34	1.95
137982--138241	100	2.6	99	85	2	353	31	18	17	32	1.94
142126--142163	20	1.9	20	89	10	60	73	0	5	21	1.02
150647--150677	16	1.9	16	100	0	62	51	19	9	19	1.74

Tables:   1

The End!