genome.fa.s4710.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004710.1 Hibiscus syriacus cultivar Beakdansim tig00010614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177538

Tables:   1   2   

This is table  1  of  2  ( 125 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5201--5486	37	7.9	37	74	13	188	44	4	5	45	1.47
5201--5506	74	4.2	74	74	14	255	44	4	6	45	1.49
5543--5589	3	16.3	3	82	12	55	25	2	0	72	0.96
7533--8353	165	5.0	165	94	0	1349	29	25	21	24	1.99
9039--9147	35	3.1	34	80	10	121	45	3	6	44	1.47
9014--9147	72	1.9	72	89	6	209	44	3	7	44	1.50
8992--9279	37	7.8	37	72	13	188	45	4	5	44	1.47
9166--9228	29	2.1	31	85	5	85	49	4	0	46	1.23
10547--10594	12	3.8	13	78	10	55	70	0	2	27	0.98
10596--10626	2	15.5	2	93	0	53	51	0	0	48	1.00
10664--10769	37	2.9	36	81	8	108	44	5	4	45	1.48
10928--11154	95	2.5	88	82	12	268	30	21	20	28	1.98
10989--11172	95	1.9	95	94	2	325	29	17	19	32	1.95
14856--14899	3	14.3	3	81	13	54	27	2	0	70	0.99
15084--16257	587	2.0	586	98	0	2294	41	27	19	11	1.86
28484--28592	20	5.4	20	84	4	139	39	19	21	20	1.93
28484--28592	41	2.7	40	91	5	175	39	19	21	20	1.93
29453--29506	24	2.2	24	93	0	90	20	18	20	40	1.91
32061--32112	14	3.4	14	72	23	50	46	19	23	11	1.82
32047--32169	33	3.7	33	92	4	196	47	17	21	12	1.80
32051--32173	19	7.3	18	67	25	72	47	17	22	11	1.80
32169--32214	19	2.4	19	88	0	65	15	13	26	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32217--32263	19	2.5	19	92	0	76	14	21	19	44	1.86
32370--32406	14	2.6	14	91	0	65	45	21	0	32	1.52
33759--33825	21	3.2	21	68	4	55	19	20	35	23	1.95
33759--33881	42	2.9	41	79	7	113	22	18	36	21	1.95
34280--34386	19	5.8	19	73	12	89	46	21	19	12	1.82
34392--34429	20	1.9	20	94	0	67	7	15	26	50	1.72
34563--34924	83	4.0	94	83	10	477	46	18	12	22	1.82
34663--34924	95	2.8	94	89	5	390	46	18	12	22	1.83
36617--36696	20	4.1	19	79	6	79	46	16	22	15	1.84
36723--36794	20	3.5	20	84	5	92	12	16	19	51	1.76
37345--37418	20	3.6	21	85	5	98	21	20	20	37	1.94
37415--37460	21	2.2	21	88	0	65	36	17	28	17	1.92
37670--37700	16	1.9	16	93	0	53	16	9	35	38	1.81
38708--38734	10	2.7	10	100	0	54	37	0	7	55	1.28
38881--39042	29	5.6	28	81	6	175	37	4	21	37	1.73
38903--39040	57	2.4	58	80	4	156	40	4	21	34	1.73
46211--46254	16	2.7	16	89	3	70	18	47	22	11	1.80
46256--46420	59	2.8	59	82	4	174	37	5	21	35	1.77
46256--46420	29	5.6	29	82	8	183	37	5	21	35	1.77
48723--48776	13	4.0	13	78	4	54	64	14	9	11	1.48
57007--57043	2	18.5	2	100	0	74	51	0	0	48	1.00
59142--59166	12	2.1	12	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63620--63700	18	4.5	18	80	0	72	8	4	56	29	1.50
63620--63736	54	2.2	54	84	3	155	8	7	57	26	1.56
63728--63858	42	3.1	42	82	6	158	12	6	57	23	1.59
63788--64180	60	6.8	60	84	8	368	13	9	54	21	1.67
63797--63951	30	5.2	30	64	20	90	14	9	55	21	1.66
63895--63999	48	2.2	48	96	0	192	15	8	56	20	1.65
63788--64119	168	2.0	168	87	2	479	14	9	54	21	1.67
63858--64059	108	1.9	108	90	0	323	15	9	54	20	1.68
63979--64197	30	7.3	29	64	17	90	13	8	55	22	1.65
63944--64206	60	4.4	60	93	0	402	13	9	55	22	1.66
64289--64353	30	2.2	30	86	5	87	12	1	61	24	1.39
65024--65171	35	4.2	34	92	3	215	42	22	1	33	1.62
66191--66302	35	3.2	34	85	2	143	35	0	21	41	1.59
79610--79654	2	22.5	2	100	0	90	48	0	0	51	1.00
79754--79835	23	3.6	23	81	6	103	31	23	25	19	1.98
81483--81519	19	1.9	19	100	0	74	24	27	16	32	1.96
83862--83910	16	3.3	14	76	23	55	83	2	12	2	0.82
83863--83915	6	8.7	6	78	17	56	83	1	13	1	0.82
83864--83922	12	5.0	11	80	13	64	81	3	13	1	0.90
85437--85509	34	2.1	34	92	0	119	39	19	19	21	1.92
85307--85626	151	2.1	151	87	1	471	33	23	17	25	1.96
85458--85965	117	4.3	118	83	3	536	33	23	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85458--85901	117	3.8	117	86	1	557	32	23	16	26	1.96
87896--87990	25	3.8	25	92	2	156	45	24	4	26	1.71
88221--88267	15	3.2	15	84	6	69	8	63	19	8	1.48
90030--90093	2	32.0	2	96	0	119	48	0	0	51	1.00
93775--93831	25	2.4	24	80	13	64	31	22	7	38	1.81
97505--97600	33	2.9	33	90	0	147	18	17	37	26	1.93
106019--106136	42	2.9	42	96	2	213	20	22	20	36	1.95
108137--108179	23	1.9	22	90	4	68	72	4	0	23	1.04
108869--108920	18	2.9	18	94	2	88	23	26	23	26	2.00
109335--109401	35	1.9	35	93	0	116	31	13	37	17	1.89
109513--109552	15	2.7	15	80	0	53	52	0	0	47	1.00
118445--118482	2	19.5	2	94	5	69	47	0	0	52	1.00
119411--119587	20	8.9	19	77	9	124	29	14	23	32	1.94
122122--122173	15	3.5	15	78	0	59	9	61	15	13	1.56
123279--123381	36	2.9	36	97	0	188	42	16	17	23	1.88
124826--124907	20	4.1	20	83	0	110	34	23	20	21	1.97
127504--127557	24	2.2	24	93	0	90	40	20	18	20	1.91
128480--128578	40	2.5	40	86	4	139	23	15	23	38	1.92
128476--128579	20	5.2	20	84	2	120	22	16	23	38	1.93
128524--128612	20	4.4	20	76	10	65	30	16	21	31	1.96
128504--128591	40	2.2	40	85	4	115	25	15	21	37	1.93
128575--128624	21	2.4	21	93	0	91	42	18	18	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128636--128689	20	2.7	20	75	11	65	27	14	29	27	1.95
129280--129313	17	2.0	17	100	0	68	35	17	5	41	1.74
129179--129466	143	2.1	138	93	3	486	35	10	4	50	1.57
129423--129456	17	2.0	17	100	0	68	35	17	5	41	1.74
130306--130363	29	2.0	30	89	3	91	41	3	13	41	1.62
133673--133705	15	2.4	14	85	14	50	36	3	0	60	1.12
139820--140136	156	2.0	156	89	2	485	24	21	20	33	1.97
144091--144248	21	7.8	20	71	9	88	38	25	16	19	1.92
144151--144267	20	5.7	20	75	12	78	38	23	17	20	1.93
144235--144444	20	10.5	20	82	5	219	36	24	18	20	1.95
145126--145172	24	2.0	24	87	8	69	25	14	21	38	1.92
147652--147885	33	6.9	33	82	12	246	46	17	22	13	1.83
147666--147863	19	11.4	19	73	21	193	46	17	21	14	1.83
147694--147863	52	3.2	52	96	0	313	47	16	22	14	1.82
147823--147877	14	3.6	14	73	21	56	45	20	23	10	1.82
147892--148007	53	2.2	53	98	1	225	13	24	18	43	1.86
147910--148007	19	5.4	19	84	13	143	14	22	17	45	1.84
148114--148150	14	2.6	14	91	0	65	45	21	0	32	1.52
150106--150198	33	2.8	33	91	0	150	48	21	18	11	1.80
150069--150203	19	7.6	19	76	16	119	46	23	17	11	1.81
150125--150181	14	3.7	14	75	20	51	45	22	19	12	1.83
150199--150327	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150199--150290	33	2.8	33	93	3	150	7	18	28	45	1.76
150375--150750	93	4.1	93	98	0	718	46	18	12	22	1.83
152449--152554	19	6.1	19	73	20	106	45	20	23	10	1.82
152457--152549	33	2.8	33	98	0	177	45	22	22	9	1.81
152476--152532	14	3.7	14	75	20	60	43	22	24	8	1.81
152449--152554	52	2.0	51	81	13	119	45	20	23	10	1.82
152566--152622	14	3.7	14	75	20	60	8	24	22	43	1.81
152550--152630	33	2.5	33	95	0	144	8	22	22	46	1.78
152607--152682	21	3.7	21	83	3	109	11	25	17	46	1.82
152606--152683	41	1.9	41	97	0	147	12	25	16	44	1.83

Tables:   1   2