genome.fa.s4711.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004711.1 Hibiscus syriacus cultivar Beakdansim tig00010618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90175

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--72	23	3.0	23	84	2	84	19	26	26	27	1.99
2293--2345	20	2.6	21	93	6	99	33	24	15	26	1.95
2400--2450	20	2.5	21	81	6	52	31	13	25	29	1.94
2429--2556	53	2.4	54	85	4	159	30	18	22	28	1.98
2941--2991	21	2.4	21	93	0	84	39	11	21	27	1.88
3165--3221	23	2.5	23	88	5	80	19	24	26	29	1.98
11223--11360	72	1.9	71	92	1	231	35	13	26	24	1.92
14676--14924	125	2.0	125	83	1	311	32	15	25	26	1.95
16126--16239	37	3.1	37	89	2	176	33	23	17	25	1.96
16626--16981	54	6.6	54	88	2	441	33	19	25	21	1.97
16626--16984	163	2.2	163	86	4	485	33	18	25	21	1.96
16626--16983	109	3.3	107	86	5	461	33	18	25	21	1.97
16628--17051	54	7.8	53	82	10	325	32	18	26	22	1.97
16901--17055	55	2.9	55	86	9	171	27	18	27	27	1.98
19366--19407	12	3.4	12	75	18	50	61	2	4	30	1.29
19959--19996	14	2.7	14	83	0	58	63	0	7	28	1.23
22449--22485	13	2.8	13	95	0	65	67	0	0	32	0.91
23088--23251	81	2.0	82	98	1	321	49	7	1	42	1.38
29421--29483	4	15.8	4	100	0	126	0	25	23	50	1.49
34346--34447	31	3.2	31	83	5	107	53	3	1	40	1.30
44786--44836	3	17.0	3	100	0	102	66	0	0	33	0.92
45010--45052	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59034--59060	14	1.9	14	100	0	54	3	22	51	22	1.63
59063--59125	10	6.7	9	80	8	72	28	30	25	15	1.96
59063--59126	9	6.7	10	78	10	64	28	29	25	17	1.97
59063--59125	19	3.3	19	86	4	83	28	30	25	15	1.96
66328--66398	37	1.9	37	91	0	115	45	2	19	32	1.65
66885--66941	28	2.0	28	86	0	78	33	15	17	33	1.92
67377--67458	44	1.9	41	85	7	110	32	6	28	32	1.82
67381--67467	19	4.3	19	74	17	77	37	5	26	29	1.80
69258--69286	2	15.0	2	92	7	51	48	0	0	51	1.00
70872--70909	16	2.4	16	100	0	76	34	15	21	28	1.94
80564--80700	17	7.7	17	77	13	91	74	0	18	7	1.04
80549--80714	55	2.9	55	73	21	153	71	0	20	7	1.10
80578--80639	29	2.1	30	82	8	74	72	0	19	8	1.09
80557--80641	13	6.8	12	70	12	64	75	0	17	7	1.02
80557--80694	19	7.0	20	70	18	85	73	0	18	7	1.06
80549--80673	10	13.4	10	67	22	60	71	0	20	8	1.12
81987--82060	37	2.0	38	94	2	132	35	17	21	25	1.95
82069--82479	55	7.7	55	81	5	369	28	18	24	28	1.98
82069--82441	159	2.3	160	83	3	457	27	17	24	29	1.97
83750--83870	64	1.9	64	91	1	197	35	19	21	23	1.96
83774--83973	104	1.9	102	83	6	251	31	22	21	24	1.98
83837--83910	19	3.8	19	86	10	105	27	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84308--84410	29	3.6	29	96	1	181	44	14	21	19	1.86
87389--87511	40	3.1	39	90	1	192	36	24	20	18	1.95
87389--87585	19	10.2	19	71	13	91	38	22	19	20	1.94
87391--87532	21	7.0	21	73	7	132	35	25	20	19	1.96
87389--87595	21	10.6	19	71	13	93	37	22	19	20	1.94
87922--87966	2	23.5	2	86	8	67	48	0	2	48	1.13
88768--88853	21	4.1	20	65	27	52	48	1	3	46	1.26
89195--89227	18	1.9	17	88	11	50	51	0	0	48	1.00
89197--89255	30	2.0	29	83	9	75	54	0	0	45	0.99
89363--89397	18	2.1	16	89	10	52	60	0	11	28	1.32

Tables:   1

The End!