Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004712.1 Hibiscus syriacus cultivar Beakdansim tig00010621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71101

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9467--9494
6
4.7
6
100
0
56
53
14
0
32
1.41
20111--20143
14
2.2
16
89
10
52
18
9
6
66
1.40
28513--28551
3
13.7
3
84
10
55
66
0
0
33
0.92
31426--31468
3
14.7
3
81
13
54
65
0
2
32
1.06
31452--31500
23
2.0
23
84
7
62
73
2
10
14
1.18
31452--31531
24
3.2
25
75
18
76
75
1
7
16
1.10
31396--31538
12
12.0
12
70
15
66
74
1
5
18
1.09
31420--31530
17
6.6
16
70
23
61
72
0
5
20
1.09
31449--31538
25
3.5
26
71
18
73
74
1
7
16
1.11
31446--31531
28
3.2
27
75
20
74
74
1
6
17
1.10
31497--31546
24
2.1
24
81
7
57
76
4
6
14
1.13
33247--33517
83
3.2
83
86
1
389
21
19
26
32
1.97
33519--33575
27
2.1
27
90
6
89
35
8
15
40
1.79
33546--33625
34
2.4
34
93
2
135
33
11
20
35
1.88
33679--33783
37
2.9
36
88
2
147
40
16
20
21
1.91
33808--34970
103
11.1
105
93
1
1864
23
18
25
32
1.97
33799--34970
209
5.6
209
94
1
1910
23
18
25
32
1.97
38603--38649
3
15.7
3
82
8
60
65
0
2
31
1.04
38635--38713
23
3.3
23
73
23
72
75
1
7
15
1.08
38573--38719
12
12.0
12
73
17
81
74
1
5
19
1.09
38615--38711
15
5.9
16
74
18
67
73
1
6
19
1.11
38629--38712
28
3.2
27
75
17
79
75
1
7
16
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38629--38727
25
4.0
24
72
12
58
73
3
8
15
1.18
43916--44000
42
2.0
42
95
0
152
50
11
11
25
1.73
45538--45605
23
3.0
23
82
0
91
36
23
20
19
1.95
46531--46607
23
3.3
23
76
5
84
35
22
18
24
1.96
47569--47611
21
2.0
21
91
8
70
32
18
25
23
1.97
48673--48730
2
29.0
2
100
0
116
50
0
0
50
1.00
49336--49476
64
2.2
63
81
7
160
26
24
17
31
1.97
51290--51452
30
5.4
30
96
0
281
32
24
17
25
1.97
51290--51479
90
2.1
91
88
1
274
33
24
17
24
1.96
51705--52083
4
96.2
4
95
3
689
49
24
0
26
1.52
54730--54768
2
19.5
2
100
0
78
51
0
0
48
1.00
55561--55643
17
4.7
18
77
5
89
16
1
31
50
1.53
55561--55643
26
3.2
26
85
1
103
16
1
31
50
1.53
55534--55648
44
2.6
45
83
4
153
20
1
28
49
1.58
55542--55646
9
11.9
9
74
4
79
18
1
30
49
1.58
57072--57120
19
2.6
19
96
0
89
32
2
10
55
1.45
57233--57997
200
3.8
200
94
0
1280
36
15
18
30
1.92
57233--57997
401
1.9
399
92
1
1280
36
15
18
30
1.92
58064--58652
183
3.2
183
98
0
1124
34
14
16
33
1.90
61492--61564
23
3.2
23
90
0
110
35
5
20
38
1.76
61969--62043
23
3.4
22
83
8
73
44
4
17
34
1.67
61981--62053
23
3.2
23
90
0
110
38
5
17
38
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61153--62454
489
2.7
489
95
1
2320
42
7
10
39
1.68
66820--66858
17
2.3
17
82
8
53
23
10
2
64
1.37
67307--67344
13
2.9
13
81
14
51
21
0
34
44
1.52
68542--68664
64
1.9
65
81
8
153
30
22
18
28
1.98

Tables:   1

The End!