genome.fa.s4716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004716.1 Hibiscus syriacus cultivar Beakdansim tig00010632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129450

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4736--4820	7	12.1	7	100	0	170	14	29	0	56	1.38
9103--9184	40	2.0	40	97	0	155	36	26	13	23	1.92
11434--11463	2	15.5	2	93	6	53	50	0	0	50	1.00
14209--14374	73	2.3	73	84	0	215	32	24	18	24	1.97
22811--22973	73	2.2	72	82	5	204	29	24	20	25	1.99
23224--23264	17	2.4	18	80	12	50	29	17	4	48	1.67
25589--25623	18	1.9	18	94	0	61	34	8	0	57	1.29
25758--25793	2	18.0	2	100	0	72	50	0	0	50	1.00
28774--28800	4	6.8	4	100	0	54	25	0	0	74	0.83
38035--38060	2	13.0	2	100	0	52	50	0	0	50	1.00
45824--45873	25	2.0	26	88	4	75	28	24	16	32	1.96
50418--50467	25	2.0	26	88	4	75	30	26	14	30	1.94
52506--52536	12	2.6	12	94	0	53	22	0	25	51	1.48
79850--79894	20	2.2	20	88	0	63	20	15	22	42	1.89
80492--80645	28	5.5	28	78	12	156	21	14	16	47	1.82
80492--80640	27	5.4	27	78	10	131	20	15	16	46	1.83
85147--85224	28	2.8	28	79	12	97	44	16	3	34	1.66
87078--87112	13	2.7	13	100	0	70	54	17	14	14	1.72
94420--94482	23	2.7	23	92	0	99	19	28	26	25	1.98
97571--97641	29	2.4	29	100	0	142	39	26	9	23	1.86
104863--104908	20	2.3	20	92	0	74	19	21	17	41	1.90
105267--105310	22	2.1	22	87	8	65	34	22	9	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105386--105423	20	1.9	20	94	0	67	39	21	18	21	1.93
109780--109807	2	14.0	2	100	0	56	50	0	0	50	1.00
110171--110239	31	2.3	31	87	2	95	23	13	13	50	1.75
110379--110447	31	2.2	31	89	0	102	24	13	11	50	1.74
110798--110874	31	2.5	31	87	4	93	49	14	12	23	1.78
116137--116213	30	2.5	31	75	10	79	46	5	3	44	1.44
117199--117229	2	15.5	2	100	0	62	48	0	0	51	1.00
117241--117276	16	2.1	18	90	10	58	52	2	2	41	1.30
117446--117494	25	1.9	26	87	4	73	40	10	0	48	1.37
127433--127479	21	2.2	21	92	0	76	65	10	8	14	1.45

Tables:   1

The End!