Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004719.1 Hibiscus syriacus cultivar Beakdansim tig00010645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64168

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3041--3070
2
15.0
2
100
0
60
50
0
0
50
1.00
3335--3391
21
2.7
21
91
0
87
28
21
26
24
1.99
3680--3713
17
2.1
17
88
5
52
52
0
17
29
1.45
9100--9133
18
1.9
17
94
5
59
58
5
17
17
1.57
9514--9562
24
2.0
24
84
8
62
53
0
12
34
1.39
10030--10070
22
1.9
21
85
14
57
26
24
24
24
2.00
10826--10874
17
2.8
18
90
6
82
24
32
24
18
1.97
14912--14962
18
2.9
18
88
5
70
25
35
17
21
1.95
30758--30798
21
2.0
21
85
0
55
43
9
0
46
1.36
31403--31472
36
1.9
37
82
8
90
45
1
7
45
1.39
31509--31555
23
2.0
23
95
0
85
51
0
6
42
1.27
31529--31667
37
3.7
38
83
8
171
50
1
5
43
1.33
31403--31697
135
2.2
133
82
10
339
46
1
6
45
1.39
32994--33175
8
22.4
8
66
15
61
17
6
2
74
1.14
33103--33156
28
2.0
27
82
17
67
22
3
0
74
0.98
33206--33252
19
2.6
18
83
12
60
21
6
0
72
1.07
36950--37058
31
3.5
31
86
5
157
43
12
5
38
1.66
42060--42292
119
2.0
120
84
5
312
28
11
3
56
1.52
42848--42899
19
2.7
18
82
8
59
26
11
17
44
1.83
44206--44238
15
2.2
15
100
0
66
6
69
18
6
1.30
47866--47946
18
4.6
16
79
15
72
76
2
3
17
1.04
47866--47930
9
7.2
9
77
19
73
78
1
1
18
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47866--47931
5
14.4
5
78
15
63
78
1
1
18
0.90
47957--48168
81
2.6
78
87
7
248
43
9
5
41
1.60
47956--48166
40
5.2
39
74
19
168
43
9
5
41
1.60
48130--48156
14
1.9
14
100
0
54
37
14
11
37
1.82
51284--51325
20
2.0
21
90
4
68
35
14
9
40
1.78
55431--55654
118
1.9
118
100
0
448
44
15
17
22
1.86
58020--58049
12
2.5
12
88
0
51
40
0
10
50
1.36
58917--58950
13
2.8
12
86
8
50
55
2
0
41
1.15
61769--62059
37
7.9
36
77
10
223
44
4
6
45
1.49
61769--62071
73
4.1
73
75
13
230
43
4
6
44
1.51
61910--61972
29
2.1
31
82
5
76
49
4
1
44
1.33
62074--62139
2
34.5
2
82
14
86
45
1
1
51
1.19

Tables:   1

The End!