genome.fa.s4721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004721.1 Hibiscus syriacus cultivar Beakdansim tig00010647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66646

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4053--4097	23	2.0	23	90	0	72	35	40	0	24	1.56
11366--11401	16	2.2	16	90	9	56	75	0	2	22	0.94
12113--12163	20	2.5	20	100	0	102	35	17	19	27	1.94
15855--15895	21	2.0	21	90	0	64	26	21	21	29	1.99
15864--15904	21	2.0	21	85	0	55	31	26	14	26	1.95
16314--16481	44	3.8	45	90	3	252	29	19	7	43	1.78
16314--16481	89	1.9	89	87	4	250	29	19	7	43	1.78
17940--17978	17	2.3	17	86	8	53	33	17	0	48	1.48
22891--22941	19	2.5	20	73	17	52	25	0	1	72	0.95
22886--22941	20	2.8	19	76	17	60	25	0	1	73	0.93
24368--24421	20	2.7	19	80	8	63	14	14	22	48	1.81
27707--27846	66	2.2	62	87	7	194	30	0	17	50	1.51
27906--27992	20	4.7	20	69	16	78	39	22	18	19	1.93
28201--28286	38	2.2	39	93	2	147	17	12	20	48	1.80
28597--28633	18	2.1	18	89	0	56	51	10	8	29	1.65
29433--29468	18	2.0	18	94	0	63	16	2	25	55	1.55
29506--29548	19	2.3	19	100	0	86	23	9	30	37	1.86
30529--30570	20	2.1	20	86	0	57	19	14	26	40	1.89
30560--30610	20	2.5	20	87	0	75	23	21	23	31	1.98
33753--33812	17	3.4	16	78	15	57	18	3	1	76	1.00
35952--36005	22	2.4	23	81	12	67	57	11	11	20	1.63
37239--37287	22	2.3	22	78	3	55	34	8	4	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38685--38772	46	1.9	46	90	4	142	23	20	10	45	1.82
39070--39555	55	8.9	55	90	2	755	35	16	11	36	1.84
39071--39555	109	4.4	110	90	3	739	35	16	11	36	1.84
44527--44552	12	2.2	12	100	0	52	76	0	0	23	0.78
44525--44555	15	2.1	14	94	5	53	74	0	0	25	0.82
44945--45006	30	2.1	29	82	8	72	38	16	11	33	1.84
50971--51810	45	18.9	45	78	9	340	41	16	16	24	1.89
50992--51806	90	9.2	88	80	6	691	41	16	16	24	1.89
50992--51824	135	6.3	133	79	8	659	42	16	16	24	1.88
51142--51878	354	2.1	351	87	3	1075	41	16	16	25	1.89
51149--51878	45	16.6	42	80	7	638	41	16	16	25	1.89
54400--54452	3	17.7	3	92	7	90	64	0	0	35	0.94
57236--57274	19	2.1	19	90	0	60	43	15	10	30	1.80
57723--58026	57	5.3	57	93	0	491	36	9	18	35	1.83
61770--62026	43	6.1	43	83	8	314	33	19	22	24	1.97
61802--62041	124	1.9	126	82	9	303	32	20	21	24	1.97
65032--65449	41	10.3	41	78	8	388	35	19	17	27	1.94
65032--65449	80	5.1	83	75	12	251	35	19	17	27	1.94
65032--65448	163	2.6	163	77	10	388	35	19	17	27	1.94

Tables:   1

The End!