genome.fa.s4722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004722.1 Hibiscus syriacus cultivar Beakdansim tig00010648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131449

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2993--3135	21	6.8	21	88	8	154	39	23	20	17	1.92
7884--8038	36	4.3	36	89	3	231	36	24	20	18	1.94
7884--8072	36	5.2	36	84	5	195	37	23	19	20	1.95
8452--8747	51	5.6	51	82	7	315	33	19	25	22	1.97
8443--8740	104	2.8	105	80	7	334	33	19	24	22	1.97
8736--8971	55	4.4	55	83	3	273	30	13	29	26	1.94
8736--8968	108	2.2	108	88	0	349	30	13	29	26	1.94
8605--9018	55	7.6	54	72	13	212	31	15	26	26	1.96
8736--9017	108	2.6	108	84	2	298	31	13	27	26	1.94
13033--13462	149	2.9	149	94	0	763	34	13	16	36	1.87
13581--13635	23	2.4	23	87	0	83	16	21	12	49	1.79
14890--14943	22	2.5	22	96	0	99	38	18	11	31	1.86
16015--16039	2	12.5	2	100	0	50	52	0	0	48	1.00
17929--17970	3	14.0	3	87	0	57	61	4	2	30	1.29
25627--25803	56	3.1	55	81	10	196	32	10	13	43	1.78
26512--26574	20	3.2	20	68	19	51	41	11	22	25	1.86
26394--26837	116	3.8	115	80	3	453	40	14	21	23	1.90
26748--26916	91	1.9	91	92	0	284	42	17	20	20	1.89
26630--27029	207	1.9	207	85	3	554	41	16	21	21	1.91
26827--27087	116	2.3	116	81	2	303	42	16	20	19	1.89
27063--27364	139	2.2	138	83	5	378	40	14	21	23	1.90
35438--35462	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35883--35910	2	14.0	2	100	0	56	50	0	0	50	1.00
36169--36226	21	2.8	21	92	2	91	22	1	24	51	1.57
36606--36715	37	3.0	37	85	5	161	40	14	13	30	1.85
36609--36715	35	2.9	37	84	5	155	41	14	13	30	1.84
37262--37340	35	2.4	33	81	12	99	30	3	3	62	1.31
37340--37434	46	2.1	46	84	11	124	20	4	1	74	1.04
37358--37438	9	9.0	8	74	15	54	18	2	1	77	0.94
37458--37526	31	2.2	32	84	7	88	17	7	1	73	1.12
41271--41514	95	2.7	92	80	14	287	30	18	19	32	1.95
42615--44086	84	17.9	83	77	8	1358	31	24	19	25	1.98
42619--44086	165	8.9	168	79	8	1180	31	24	19	24	1.98
42619--44085	658	2.2	652	86	5	1997	31	24	19	24	1.98
45258--45303	2	23.0	2	100	0	92	50	0	0	50	1.00
45305--45472	9	17.9	9	67	23	55	23	2	1	72	1.08
45289--45393	39	2.6	41	79	10	135	31	0	2	64	1.14
45322--45568	4	60.8	4	68	19	59	22	4	1	71	1.14
45289--45407	41	2.9	39	79	10	125	29	1	2	66	1.14
45329--45470	46	3.1	45	79	13	132	23	3	1	71	1.10
45395--45475	37	2.2	37	79	16	96	17	3	1	77	0.97
45401--45488	38	2.2	40	75	9	92	20	4	1	73	1.07
45390--45503	52	2.1	56	82	11	139	17	6	1	74	1.11
46630--46677	25	1.9	25	83	8	62	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55776--55814	17	2.2	18	90	4	62	74	12	0	12	1.08
55781--55858	26	3.0	26	73	17	72	70	6	2	20	1.21
55852--55890	19	2.1	19	85	9	53	56	7	0	35	1.28
56033--56072	3	13.3	3	83	0	53	35	27	2	35	1.71
63074--63107	17	2.0	17	88	0	50	29	14	20	35	1.93
68800--68881	2	41.5	2	97	2	157	0	50	0	50	1.00
69461--69502	11	3.6	12	81	12	52	57	2	4	35	1.33
69461--69511	24	2.1	24	85	7	68	52	5	5	35	1.50
71042--71095	24	2.2	25	78	12	60	44	0	1	53	1.11
71437--71478	23	1.9	22	85	9	59	52	2	7	38	1.42
72478--72590	54	2.1	55	86	1	156	6	28	4	61	1.40
74224--74407	92	2.0	92	96	0	341	30	13	22	33	1.93
75411--75479	25	2.8	25	88	2	95	39	21	15	23	1.92
76223--76275	21	2.5	21	96	0	97	22	20	32	24	1.98
76340--76526	64	2.9	64	79	9	179	30	16	22	29	1.96
76907--76942	3	12.0	3	88	11	56	33	0	0	66	0.92
76907--76955	15	3.3	15	81	16	57	34	0	2	63	1.06
78635--78768	11	11.5	11	69	20	62	19	4	1	74	1.07
78641--78770	8	15.5	8	70	20	63	19	4	1	74	1.07
78711--78769	10	5.7	10	77	18	59	18	1	0	79	0.81
78704--78764	21	2.9	22	85	9	74	18	1	0	80	0.80
78637--78769	33	4.1	33	73	18	86	18	4	1	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83614--83903	145	2.0	145	95	0	517	38	10	17	33	1.84
98110--98140	15	2.1	15	100	0	62	6	19	12	61	1.53
105032--105069	20	1.9	20	100	0	76	31	21	23	23	1.98
107039--107081	22	2.0	20	86	8	59	48	4	0	46	1.22
108575--108639	27	2.4	26	82	7	76	44	3	1	50	1.26
108596--108648	26	2.0	26	82	10	63	47	3	1	47	1.31
110307--110345	18	2.2	18	95	4	71	64	2	0	33	1.08
110316--110368	23	2.3	23	78	12	56	67	3	0	28	1.07
110325--110371	24	2.0	24	83	8	60	68	4	0	27	1.08
118121--118150	15	2.0	15	93	0	51	33	16	13	36	1.88
126247--126284	15	2.8	13	85	14	58	47	36	15	0	1.46
127955--128003	18	2.7	19	78	15	59	4	8	16	71	1.26

Tables:   1

The End!