genome.fa.s4724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004724.1 Hibiscus syriacus cultivar Beakdansim tig00010651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76372

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1837--1889	18	2.9	18	97	0	97	18	22	33	24	1.97
3588--3621	18	1.9	17	94	5	59	17	17	5	58	1.57
3791--3832	2	21.0	2	100	0	84	50	0	0	50	1.00
9126--9198	18	4.2	17	75	20	62	32	13	0	53	1.40
9461--9517	21	2.7	21	91	0	87	24	26	21	28	1.99
9788--9817	2	15.0	2	100	0	60	50	0	0	50	1.00
12967--13041	23	3.4	22	92	3	107	30	28	14	26	1.95
12978--13041	23	2.8	23	97	0	119	31	28	15	25	1.96
17969--18032	24	2.7	24	92	0	101	21	20	21	35	1.96
19660--19720	24	2.5	24	86	0	77	21	16	24	37	1.93
21577--21626	26	1.9	26	88	8	75	28	2	4	66	1.21
24409--24434	2	13.0	2	100	0	52	50	0	0	50	1.00
25537--25629	41	2.3	43	80	10	97	54	3	0	41	1.16
25615--25646	15	2.2	15	94	5	57	50	0	0	50	1.00
28383--28413	16	1.9	16	100	0	62	51	19	9	19	1.74
38770--38818	19	2.6	19	96	0	89	30	20	22	26	1.98
38911--39058	20	7.4	20	94	0	260	42	19	18	19	1.89
39238--39324	22	4.0	22	89	0	129	25	37	13	22	1.91
39692--39741	20	2.5	20	86	0	64	20	18	26	36	1.95
39709--39764	20	2.8	20	91	0	85	10	16	23	50	1.76
39728--39771	20	2.2	20	91	0	70	11	13	20	54	1.69
41658--41709	20	2.6	20	87	0	77	42	23	15	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41748--41816	20	3.5	20	89	0	93	39	23	17	20	1.92
41859--41927	20	3.5	20	85	0	93	18	18	23	39	1.93
42412--42453	21	2.2	19	87	12	59	21	35	19	23	1.96
42435--42517	42	2.0	42	81	9	98	21	39	18	20	1.92
43903--43938	14	2.6	14	90	0	54	30	0	22	47	1.52
44044--44124	33	2.4	33	89	2	117	43	20	23	12	1.86
44102--44166	22	3.0	22	91	4	98	47	18	24	9	1.77
44189--44223	14	2.5	14	85	0	52	17	14	14	54	1.72
44176--44271	33	2.8	33	84	3	111	13	20	19	45	1.84
44243--44311	20	3.5	20	86	4	86	17	18	24	39	1.92
47622--47748	20	6.3	20	90	0	200	25	19	25	28	1.99
47735--47787	20	2.7	20	96	0	97	18	20	22	37	1.94
47784--47829	21	2.2	21	84	0	56	43	17	21	17	1.88
50120--50156	5	7.4	5	87	0	56	24	0	0	75	0.80
51307--51378	31	2.4	32	81	11	98	61	2	6	29	1.36
51754--51937	60	3.0	60	73	10	176	42	5	20	30	1.76
62520--62920	1	401.0	1	89	0	604	5	0	0	94	0.31
75481--75513	2	16.5	2	93	0	57	45	3	0	51	1.16

Tables:   1

The End!