Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004726.1 Hibiscus syriacus cultivar Beakdansim tig00010657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59134

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5259--5288
15
1.9
16
93
6
53
60
26
3
10
1.45
7029--7067
20
2.0
20
84
0
51
51
5
0
43
1.24
13172--13216
23
2.0
23
100
0
90
42
26
22
8
1.83
14288--14363
31
2.5
31
82
4
91
40
10
9
39
1.72
16084--16112
2
14.5
2
100
0
58
51
0
0
48
1.00
18663--18722
31
2.0
30
96
3
111
30
15
15
40
1.87
26837--26861
10
2.5
10
100
0
50
64
8
0
28
1.22
31424--31456
17
1.9
17
88
11
50
27
3
6
63
1.32
31921--32168
130
1.9
130
93
0
424
35
12
14
36
1.85
32565--32640
35
2.2
35
92
0
125
35
1
23
39
1.63
35692--35734
22
2.0
22
90
0
68
9
25
25
39
1.85
35881--35926
22
2.1
22
84
8
58
45
4
0
50
1.21
36632--36680
22
2.3
22
85
3
64
44
28
18
8
1.78
42968--43039
34
2.1
35
94
2
128
37
18
8
36
1.81
46405--46450
24
1.9
24
90
0
74
30
19
28
21
1.98
47782--47843
2
32.0
2
83
6
83
46
3
0
50
1.17
52154--52407
43
5.8
43
80
7
269
52
5
18
23
1.66
52154--52431
87
3.2
84
79
7
279
52
5
17
23
1.66
52150--52470
43
7.4
42
78
12
242
52
5
17
25
1.65
55945--56013
21
3.2
21
67
15
59
53
2
1
42
1.24
55934--56017
44
1.9
44
92
0
141
51
3
2
42
1.32
55947--56042
44
2.2
43
83
7
113
50
4
2
43
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57800--57864
18
3.6
18
89
4
96
30
27
20
21
1.98

Tables:   1

The End!