Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004727.1 Hibiscus syriacus cultivar Beakdansim tig00010659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59261

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12659--12697
20
2.0
20
89
0
60
33
10
23
33
1.88
13441--13493
19
2.6
21
88
8
74
45
7
13
33
1.71
17591--17641
22
2.5
22
87
9
72
49
7
11
31
1.68
19857--19882
11
2.4
11
100
0
52
26
19
26
26
1.99
24088--24146
21
2.8
21
97
0
109
52
8
1
37
1.42
27176--27258
43
1.9
43
87
0
121
21
3
21
53
1.61
42476--42925
230
2.0
227
94
1
783
45
7
7
39
1.61
42990--43035
20
2.3
19
89
10
74
54
10
17
17
1.70
43157--43203
20
2.4
19
82
10
67
53
10
17
19
1.72
43166--43208
20
2.3
19
88
11
63
51
11
16
20
1.75
45437--45501
21
3.1
21
80
6
69
40
15
29
15
1.88
45535--45600
33
2.0
33
90
0
105
28
0
48
22
1.51
47365--47409
19
2.4
19
88
7
65
28
4
11
55
1.54
47533--48991
195
7.5
197
96
3
2709
35
15
16
32
1.90
47533--48991
391
3.7
394
96
3
2702
35
15
16
32
1.90
50453--50531
3
26.3
3
75
0
68
35
6
34
24
1.81
50446--50531
12
7.2
12
82
0
91
36
6
33
23
1.82
50446--50523
36
2.2
36
88
0
111
35
7
34
21
1.82
51983--52602
181
3.4
183
94
2
1074
36
13
16
33
1.88
55021--55070
21
2.3
21
89
6
73
36
6
18
40
1.75
55773--55858
37
2.2
39
83
6
113
51
18
11
18
1.76
56269--56341
23
3.2
23
88
0
101
34
4
21
39
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56695--56766
23
3.2
22
90
4
99
34
4
22
38
1.73
56061--57103
425
2.5
428
95
3
1875
41
7
12
38
1.72

Tables:   1

The End!