genome.fa.s4728.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004728.1 Hibiscus syriacus cultivar Beakdansim tig00010666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108654

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3887--3923	7	5.4	7	87	6	58	24	29	27	18	1.98
3887--3923	13	2.7	14	87	8	58	24	29	27	18	1.98
3920--3952	5	6.8	5	86	6	50	3	21	54	21	1.58
3926--3954	14	2.1	14	100	0	58	6	20	51	20	1.70
3955--4009	19	2.9	19	83	0	83	29	29	23	18	1.98
3949--4007	9	6.3	9	78	7	64	28	28	27	15	1.96
11023--11100	19	4.1	19	82	14	97	28	30	25	15	1.96
11021--11099	10	8.3	9	80	9	86	27	30	27	13	1.95
11022--11119	29	3.4	29	75	13	85	29	29	25	15	1.96
11647--11673	14	1.9	14	100	0	54	44	22	14	18	1.86
17648--17679	7	4.2	8	88	11	50	34	28	0	37	1.57
17648--17679	15	2.1	15	100	0	64	34	28	0	37	1.57
22004--22058	3	18.0	3	83	10	67	29	0	5	65	1.15
30133--30231	36	2.8	35	81	6	119	35	18	13	33	1.89
30205--30491	106	2.7	106	89	4	447	32	14	12	41	1.83
31377--31453	28	2.6	28	82	13	102	22	14	15	48	1.81
31499--31963	40	10.6	40	68	20	186	25	33	18	23	1.97
31531--32005	43	10.7	43	68	15	173	25	33	18	22	1.96
31480--31971	133	3.7	133	93	1	797	25	33	18	22	1.97
32171--32228	3	19.0	3	84	10	73	29	0	5	65	1.14
47450--48278	84	9.9	84	83	1	950	34	23	18	23	1.96
47450--48278	167	5.0	167	86	1	1043	34	23	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47450--48282	251	3.3	251	82	3	971	34	23	18	24	1.96
49687--49784	30	3.2	30	83	1	106	33	23	19	23	1.97
49715--49809	31	3.1	31	80	1	84	35	22	17	24	1.95
52308--52347	2	20.0	2	100	0	80	50	0	0	50	1.00
55041--55113	30	2.4	30	90	0	110	31	21	21	24	1.98
56657--57486	84	9.9	84	83	2	952	34	23	18	23	1.96
56657--57486	167	5.0	167	86	2	1029	34	23	18	23	1.96
56657--57490	251	3.3	251	83	2	1012	34	23	18	23	1.96
58898--58995	30	3.2	30	85	1	115	32	23	19	24	1.97
59352--59383	9	3.6	9	95	0	55	50	12	3	34	1.56
62291--62331	16	2.4	18	76	19	52	34	4	4	56	1.42
62984--63092	52	2.1	52	84	0	137	44	13	11	29	1.80
67826--67854	15	1.9	15	100	0	58	20	34	31	13	1.92
87575--87618	2	22.0	2	85	0	52	43	2	6	47	1.42
100466--100517	28	1.9	28	84	7	72	65	5	3	25	1.32
104697--104743	21	2.2	21	96	0	85	29	31	19	19	1.96
104758--104927	21	8.2	21	70	16	131	21	20	24	33	1.97
104783--104927	42	3.5	40	93	2	220	21	20	24	33	1.97
105586--105905	42	7.6	41	80	8	262	36	21	19	22	1.95
105596--105727	63	2.1	63	97	0	246	38	20	18	21	1.93
105614--105811	63	3.1	63	82	8	217	36	22	18	22	1.95
105589--105914	105	3.1	105	89	1	494	36	22	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105635--105842	63	3.3	63	82	8	210	37	20	19	22	1.94
105586--105914	21	15.7	21	70	14	134	36	21	19	22	1.95

Tables:   1

The End!