genome.fa.s4729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004729.1 Hibiscus syriacus cultivar Beakdansim tig00010669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220450

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116--176	24	2.6	24	89	2	88	31	22	21	24	1.98
1795--1857	18	3.6	18	73	4	65	36	17	9	36	1.82
1784--1885	35	2.9	35	98	0	195	33	16	10	39	1.84
1784--1874	17	5.2	17	68	5	74	32	17	8	40	1.80
3883--3969	27	3.5	27	66	26	82	43	12	21	21	1.86
3849--4218	47	7.9	47	86	2	476	45	12	20	22	1.84
3965--4036	20	3.2	20	66	23	54	43	11	25	20	1.85
5972--6011	20	2.0	20	95	0	71	35	17	12	35	1.88
6849--6962	60	1.9	59	81	12	135	36	17	14	30	1.90
7141--7180	2	20.0	2	100	0	80	50	0	0	50	1.00
8689--9101	206	2.0	201	86	8	564	38	18	14	28	1.90
23518--23545	12	2.3	12	100	0	56	60	0	7	32	1.24
23662--23727	9	7.3	9	73	9	55	71	4	4	19	1.22
23727--23765	21	1.9	20	84	5	51	58	7	2	30	1.39
24612--24724	60	1.9	60	96	3	210	43	7	15	33	1.75
30035--30124	31	3.0	30	79	16	105	41	7	7	43	1.62
30037--30112	32	2.4	32	85	10	95	40	6	7	44	1.59
30643--30687	18	2.5	19	75	20	51	53	0	4	42	1.21
33695--33757	32	2.0	32	90	0	99	19	22	33	25	1.97
34730--34779	3	15.7	3	88	12	73	32	0	0	68	0.90
35114--35139	2	13.0	2	100	0	52	50	0	0	50	1.00
40527--40567	14	3.0	14	79	13	50	70	4	21	2	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41735--41842	4	27.0	4	94	3	191	49	24	0	25	1.57
42372--42610	105	2.3	102	84	7	297	30	19	12	37	1.88
42556--42674	36	3.4	34	79	6	114	30	20	12	36	1.90
42574--42675	36	2.9	36	82	4	129	33	19	11	35	1.88
42921--43017	29	3.4	27	77	14	97	26	12	12	48	1.76
42934--43022	29	3.1	29	87	8	128	31	12	11	44	1.77
43123--43292	67	2.5	68	91	2	272	31	12	11	44	1.77
43519--43686	66	2.6	66	77	8	157	30	16	11	41	1.84
44266--44362	28	3.3	28	83	9	106	25	15	13	45	1.83
44382--44628	40	5.7	41	70	18	146	23	34	20	21	1.96
44420--44625	43	4.7	43	73	17	163	25	34	20	19	1.96
44368--44635	134	2.0	134	92	0	446	24	34	19	21	1.96
44372--44725	134	2.7	133	85	3	403	24	31	20	23	1.98
44912--44967	3	17.7	3	89	10	85	32	0	0	67	0.91
46399--46493	30	3.2	29	77	8	77	18	13	11	55	1.68
46393--46523	29	4.5	28	72	19	67	21	12	9	56	1.64
51873--51941	34	2.0	34	88	0	102	34	36	13	15	1.87
65116--65183	35	1.9	35	85	5	93	35	22	17	25	1.95
70100--70163	24	2.7	24	85	0	83	20	12	18	48	1.80
73157--73216	24	2.5	24	75	5	59	21	10	18	50	1.76
77473--77509	12	3.5	11	82	17	51	29	2	5	62	1.31
77700--77729	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78605--78694	34	2.6	34	85	0	126	51	10	13	25	1.72
80844--80876	17	1.9	17	93	0	57	15	27	24	33	1.95
87185--87268	33	2.5	34	82	1	116	50	10	14	25	1.75
88214--88242	11	2.6	11	100	0	58	20	37	0	41	1.53
91220--91280	32	1.9	32	93	0	104	45	21	13	19	1.84
91789--91893	3	35.0	3	100	0	210	33	0	0	66	0.92
97349--97419	35	2.0	35	86	5	99	36	22	16	23	1.94
107693--107717	2	12.5	2	100	0	50	48	0	0	52	1.00
108009--108118	42	2.6	42	92	0	184	24	11	35	28	1.91
109780--109819	21	1.9	21	84	0	53	30	2	12	55	1.50
118242--118275	16	2.1	17	94	5	61	35	23	5	35	1.79
122161--122953	39	20.7	38	85	6	919	21	27	11	38	1.89
122249--122299	26	2.0	26	100	0	102	21	35	3	39	1.72
122216--122338	65	1.9	65	91	0	201	21	30	9	38	1.86
122268--122953	78	8.8	78	89	0	1012	22	27	11	38	1.89
122268--122953	117	5.9	117	89	0	1021	22	27	11	38	1.89
122618--122682	20	3.3	20	64	20	55	23	29	9	38	1.85
123012--123394	45	8.5	45	87	2	446	31	20	22	26	1.98
123012--123388	135	2.8	135	90	3	587	31	20	22	26	1.98
124055--124131	22	3.5	22	87	3	102	36	12	14	36	1.84
124045--124135	22	4.1	22	79	9	96	38	12	14	35	1.83
129704--129787	42	2.0	42	83	0	105	19	19	10	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130194--130277	43	2.0	42	86	6	116	38	16	9	35	1.81
130744--130870	36	3.5	36	92	0	209	29	14	18	36	1.92
132320--132363	17	2.3	20	85	14	67	61	0	0	38	0.96
135043--135091	2	24.5	2	100	0	98	48	0	0	51	1.00
137857--137928	17	4.2	17	82	3	81	40	8	13	37	1.75
142740--142787	21	2.3	21	100	0	96	43	8	8	39	1.65
147532--147603	3	23.3	3	88	5	108	61	0	0	38	0.96
147759--147848	45	2.0	45	86	4	128	33	16	22	27	1.95
147782--147924	76	1.9	74	85	2	196	34	18	20	26	1.96
147866--147969	45	2.3	45	84	0	136	35	18	20	25	1.95
147759--148241	121	4.0	121	92	0	786	33	19	21	25	1.97
147986--148090	45	2.3	45	90	1	156	30	20	22	26	1.98
148098--148515	45	8.5	45	65	18	156	33	20	20	24	1.97
148190--148272	31	2.7	31	94	3	143	36	22	16	24	1.95
148069--148545	152	3.2	152	94	1	843	34	20	20	24	1.96
148350--148424	31	2.4	31	93	0	132	41	20	13	25	1.88
148371--148733	121	3.0	121	92	0	582	33	20	20	24	1.97
147835--148665	273	3.0	270	80	12	1053	34	20	20	24	1.96
148449--148588	76	1.9	74	83	5	183	32	20	22	23	1.98
148523--148635	45	2.5	45	84	7	138	30	23	23	23	1.99
156235--156278	14	3.0	14	81	18	54	61	9	13	15	1.56
158713--158757	2	22.5	2	100	0	90	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159729--159762	11	3.0	11	87	8	50	67	0	2	29	1.05
159729--159767	12	3.2	12	89	7	53	66	0	5	28	1.12
161136--161208	3	23.3	3	86	8	101	61	0	0	38	0.96
166547--166604	23	2.5	23	88	0	80	20	25	22	31	1.98
167510--167570	23	2.7	23	78	0	77	21	24	24	29	1.99
181383--181744	130	2.8	131	87	2	505	40	16	11	31	1.84
183750--183807	3	19.3	3	100	0	116	65	0	0	34	0.93
185101--185195	48	2.0	49	87	2	138	35	5	12	46	1.65
187882--187909	14	2.0	14	100	0	56	21	28	21	28	1.99
193248--193288	18	2.3	18	86	0	55	26	19	0	53	1.45
196592--196645	26	2.1	26	92	0	90	51	1	9	37	1.45
199294--199323	13	2.3	13	94	0	51	23	33	33	10	1.88
199310--199357	18	2.6	18	76	3	51	29	35	25	10	1.89
201823--201898	31	2.5	31	91	0	116	13	27	31	27	1.94
206053--206138	3	28.7	3	87	0	127	34	3	0	61	1.13
206056--206149	12	8.0	12	79	11	97	36	3	0	60	1.13
207569--207603	12	2.8	13	91	8	56	42	0	0	57	0.99
220088--220449	83	4.4	83	95	2	617	29	13	22	34	1.92

Tables:   1

The End!