genome.fa.s473.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000473.1 Hibiscus syriacus cultivar Beakdansim tig00000881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76860

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1509--1554	18	2.6	18	92	0	74	32	2	10	54	1.47
1669--2810	191	5.9	198	92	5	1951	37	15	16	30	1.90
4245--4333	6	14.3	6	74	6	61	37	7	34	20	1.82
4260--4337	3	26.0	3	74	0	66	35	6	34	23	1.80
4248--4329	39	2.2	39	89	6	125	35	8	35	20	1.83
4248--4333	12	6.9	12	79	7	91	36	8	34	20	1.83
4248--4337	18	4.8	18	76	8	81	35	7	34	22	1.83
5801--6471	181	3.7	182	95	3	1198	35	14	16	33	1.89
8921--8982	21	2.7	24	80	17	85	37	9	12	40	1.77
9269--9330	21	2.8	23	85	7	83	35	6	20	37	1.79
9293--9344	21	2.5	21	87	6	70	34	1	21	42	1.64
9603--9653	25	2.0	25	92	0	84	33	7	19	39	1.81
10239--10325	39	2.2	39	95	0	156	48	20	13	17	1.81
10660--10709	21	2.4	22	76	10	59	40	12	10	38	1.76
10724--10787	23	2.8	23	87	0	92	35	6	20	37	1.78
10724--10796	23	3.2	23	82	7	85	34	5	20	39	1.76
11171--11216	23	2.1	22	88	8	67	34	19	10	34	1.87
13511--13541	6	5.2	6	92	0	53	32	12	19	35	1.90
13622--13669	21	2.3	21	85	0	60	25	25	22	27	2.00
15351--15375	9	2.8	9	100	0	50	12	0	44	44	1.41
16990--17029	17	2.4	17	100	0	80	20	42	27	10	1.83
17583--17640	15	3.9	15	78	10	57	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17590--17661	20	3.9	21	66	28	63	61	0	0	38	0.96
17585--17661	34	2.3	34	84	8	95	59	0	0	40	0.97
21586--21703	60	2.0	60	94	3	211	38	17	17	25	1.92
24921--24946	2	13.0	2	100	0	52	50	0	0	50	1.00
26164--26525	109	3.2	111	87	3	503	28	16	22	32	1.96
26456--27432	66	14.8	66	95	0	1746	31	17	20	30	1.96
28599--28648	21	2.3	23	89	6	77	4	18	0	78	0.91
28638--28674	13	2.8	14	84	16	60	13	24	0	62	1.31
28638--28672	12	2.7	13	91	8	54	14	22	0	62	1.31
32191--32251	25	2.3	27	83	8	72	70	1	6	21	1.19
38220--38264	3	15.3	3	86	4	56	60	0	4	35	1.17
38512--38783	90	3.0	90	91	0	427	36	17	18	27	1.93
38864--39104	43	5.6	43	81	4	272	29	29	12	28	1.93
39159--39487	40	8.2	40	91	1	500	42	13	15	28	1.84
39145--39521	120	3.2	119	82	6	426	42	14	15	28	1.85
39484--39701	37	5.7	39	69	16	154	39	13	14	33	1.84
39462--39776	76	4.1	76	86	2	420	40	13	14	32	1.84
42614--42650	19	1.9	19	88	0	56	51	13	5	29	1.63
49414--49465	22	2.4	22	93	3	88	21	36	23	19	1.95
53565--53623	21	2.8	21	76	5	66	45	16	33	3	1.64
54122--54366	43	5.8	43	82	4	223	30	24	16	28	1.97
54938--54970	2	16.5	2	93	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60044--60090	19	2.5	19	96	0	85	19	38	6	36	1.77
66242--66289	24	2.0	23	84	4	60	14	12	25	47	1.79
71149--71205	24	2.4	24	84	0	78	36	21	21	21	1.95
71194--71283	23	3.9	23	79	4	92	35	24	18	21	1.96
71226--71295	23	3.0	23	74	15	72	34	24	21	20	1.97
71194--71283	46	2.0	46	84	0	117	35	24	18	21	1.96

Tables:   1

The End!