genome.fa.s4731.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004731.1 Hibiscus syriacus cultivar Beakdansim tig00010682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85853

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15639--15664	2	13.0	2	100	0	52	50	0	0	50	1.00
16944--16979	17	2.1	17	100	0	72	47	11	0	41	1.39
19164--19194	6	5.2	6	100	0	62	0	16	48	35	1.46
19287--19589	145	2.1	145	94	0	534	37	21	19	21	1.95
19284--19608	21	15.7	21	75	11	215	36	21	20	21	1.95
25251--25308	29	1.9	31	86	6	84	22	18	15	43	1.88
25443--27727	4	575.8	4	96	1	4129	48	25	1	24	1.58
28137--28197	2	30.5	2	96	0	113	49	0	1	49	1.10
35045--35250	104	2.0	103	95	2	342	42	16	15	24	1.87
36891--39897	700	4.2	714	81	6	3103	41	13	12	32	1.82
39531--41029	376	4.0	376	95	0	2566	39	14	13	32	1.85
41601--44533	740	4.1	691	81	7	2911	40	14	12	32	1.84
43102--44724	740	2.2	739	91	0	2586	40	15	12	31	1.85
46085--46183	21	4.8	20	74	6	72	37	22	18	22	1.94
46189--46420	20	11.6	19	79	8	230	37	24	16	20	1.93
46150--46420	40	6.8	39	88	2	281	39	24	16	19	1.92
46189--46420	60	3.8	60	83	4	279	37	24	16	20	1.93
46169--46420	101	2.5	101	82	7	273	38	24	16	19	1.92
47102--47148	24	2.0	24	87	8	69	25	14	21	38	1.92
47323--47347	12	2.1	12	100	0	50	72	0	28	0	0.86
49627--49837	33	6.2	33	87	8	307	46	18	21	13	1.83
49691--49748	14	3.8	14	77	20	62	48	18	22	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49627--49837	71	3.1	66	91	5	316	46	18	21	13	1.83
49641--49843	19	11.7	19	75	20	212	45	18	21	14	1.85
49852--49949	19	5.4	19	82	13	134	15	22	16	45	1.84
49833--49949	53	2.2	53	95	1	209	14	24	17	43	1.86
50056--50092	14	2.6	14	91	0	65	45	21	0	32	1.52
52069--52125	14	3.7	14	77	20	60	45	22	21	10	1.82
52050--52142	33	2.8	33	95	0	168	47	21	20	10	1.80
52013--52147	19	7.6	19	76	16	128	45	23	19	11	1.82
52143--52271	19	7.3	19	75	17	125	8	17	28	45	1.77
52143--52234	33	2.8	33	93	3	150	7	18	28	45	1.76
52319--52602	93	3.1	93	98	0	550	45	18	12	22	1.83
54307--54396	14	5.7	14	72	23	63	43	23	23	10	1.83
54299--54413	33	3.5	33	95	0	212	46	20	22	10	1.81
54321--54418	19	5.7	19	71	22	90	43	22	22	11	1.84
54430--54485	14	3.7	14	78	17	67	8	25	23	42	1.82
54414--54493	32	2.5	33	91	4	135	8	22	22	46	1.79
54425--54471	18	2.9	17	75	18	55	8	23	23	44	1.80
54469--54546	41	1.9	41	97	0	147	12	25	16	44	1.83
54470--54545	21	3.7	21	83	3	109	11	25	17	46	1.82
54627--54695	33	2.1	33	91	0	111	49	18	21	10	1.77
54877--54931	22	2.5	22	81	0	74	20	16	40	23	1.91
55078--55192	20	5.7	20	81	6	151	20	17	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55179--55232	20	2.7	19	82	5	63	12	18	24	44	1.85
55080--55231	40	3.8	40	82	6	182	19	17	25	38	1.93
55201--55355	21	7.7	20	71	8	80	19	16	24	39	1.92
65680--65770	31	2.9	31	96	0	164	24	9	24	41	1.85
66520--66561	21	2.0	22	85	4	59	71	0	0	28	0.86
66773--66848	33	2.3	32	86	2	98	35	2	14	47	1.58
74231--74335	51	2.1	51	98	0	201	27	15	20	37	1.92
78509--78548	21	1.9	22	90	10	66	12	10	40	37	1.77
78653--78743	20	4.8	20	76	15	84	26	18	27	27	1.98
78653--78722	36	1.9	36	88	0	104	27	18	27	27	1.98
78770--78823	16	2.9	19	73	24	53	25	12	29	31	1.93
82011--82064	21	2.5	20	80	11	63	27	22	22	27	1.99
82025--82072	21	2.3	21	85	7	62	29	25	16	29	1.97
82106--82154	16	2.7	18	77	22	50	28	16	28	26	1.97
83881--83918	20	1.9	20	94	0	67	55	0	7	36	1.29

Tables:   1

The End!