genome.fa.s4732.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004732.1 Hibiscus syriacus cultivar Beakdansim tig00010683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94914

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3650--3773	44	2.8	44	81	3	115	29	17	21	30	1.96
4253--4319	20	3.3	20	100	0	134	23	20	10	44	1.82
5716--5766	24	2.2	24	86	6	70	58	13	15	11	1.63
12094--12125	2	16.0	2	100	0	64	50	0	0	50	1.00
12469--12579	48	2.3	48	84	0	150	36	32	9	21	1.87
14805--14879	30	2.5	31	78	10	93	34	18	4	42	1.69
19898--19949	18	2.9	18	82	0	68	23	19	32	25	1.97
25218--25310	18	5.1	17	71	18	62	35	4	3	56	1.35
25290--25326	13	2.7	14	84	15	51	37	2	0	59	1.12
25904--25959	23	2.4	23	84	0	67	35	30	12	21	1.90
27842--27986	6	24.3	6	71	1	94	8	4	41	44	1.57
28586--28722	61	2.2	61	89	0	211	36	9	6	47	1.62
28750--28831	26	2.9	27	80	20	87	47	2	4	45	1.37
28791--28848	17	3.5	17	69	21	59	46	6	5	41	1.53
28808--28952	18	8.3	18	70	10	113	42	6	4	45	1.52
28808--28953	68	2.1	70	89	3	224	42	6	4	45	1.52
28937--28975	13	3.0	13	84	0	51	35	5	5	53	1.45
29038--29077	15	2.5	17	77	22	50	47	10	0	42	1.37
29042--29075	15	2.3	15	90	10	52	47	11	0	41	1.40
29090--29161	27	2.7	27	84	0	81	48	2	5	43	1.40
29190--29234	22	1.9	24	86	13	67	40	2	6	51	1.41
29204--29245	22	1.9	22	85	0	57	47	0	4	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29256--29290	18	1.9	18	88	0	52	45	2	5	45	1.41
29226--29292	33	2.1	32	83	10	84	46	4	7	41	1.52
29274--29336	24	2.6	24	80	12	67	46	7	4	41	1.54
29331--29362	15	2.1	15	94	0	55	40	3	6	50	1.43
29358--29411	24	2.2	24	80	3	63	46	7	5	40	1.55
29313--29382	18	3.9	18	71	17	65	44	7	5	42	1.55
29390--29473	20	4.3	19	78	11	73	45	2	9	42	1.49
29408--29602	20	9.2	20	70	21	78	45	4	7	43	1.52
29438--29526	7	13.1	7	72	9	51	49	2	6	41	1.41
29440--29511	27	2.7	27	82	2	92	50	1	6	41	1.38
29502--29536	18	1.9	18	88	0	52	45	2	5	45	1.41
29253--29671	84	5.1	84	73	17	385	43	5	7	42	1.57
29417--29526	20	5.4	20	72	13	84	48	2	6	42	1.43
29617--29750	64	2.1	64	81	5	153	40	7	7	44	1.61
29661--29710	22	2.3	22	85	0	64	40	4	4	52	1.39
29233--29688	246	1.9	245	85	8	633	44	6	7	42	1.57
29673--29698	13	2.0	13	100	0	52	38	0	7	53	1.30
29662--29781	20	5.7	22	71	14	85	39	4	7	49	1.50
29706--29782	31	2.6	31	80	15	76	40	3	9	46	1.54
29855--30237	2	192.0	2	63	22	96	45	4	4	45	1.41
29849--29905	24	2.5	22	83	11	62	49	8	1	40	1.44
29915--30205	11	27.7	10	65	25	56	45	3	4	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29959--30205	11	22.4	11	63	21	63	44	4	4	46	1.43
30087--30146	27	2.2	28	90	3	95	48	1	5	45	1.34
30105--30237	11	12.5	11	70	21	72	48	2	3	46	1.30
30175--30216	13	3.2	13	93	0	66	50	7	0	42	1.30
29915--30240	9	36.2	9	65	23	68	45	3	4	46	1.41
30363--30833	217	2.2	217	92	1	793	30	11	8	48	1.70
35293--35365	18	3.9	18	84	7	92	20	20	30	28	1.98
35290--35366	38	2.0	38	89	0	118	22	20	28	28	1.98
35731--35778	4	12.0	4	100	0	96	25	0	25	50	1.50
35776--35836	2	30.5	2	96	0	113	1	0	47	50	1.10
36801--36926	47	2.8	45	89	5	191	30	23	7	38	1.83
37034--37162	59	2.2	59	84	0	168	28	24	17	29	1.97
42125--42176	19	2.7	19	96	0	95	32	17	28	21	1.96
43604--43666	18	3.4	18	70	8	54	23	17	28	30	1.97
44043--44888	4	212.2	4	97	2	1605	25	0	25	49	1.50
49726--49773	23	2.0	25	84	8	64	52	0	2	45	1.12
50100--50145	21	2.3	20	88	7	67	41	0	0	58	0.98
50208--50505	144	2.0	153	93	6	524	49	8	7	34	1.61
51820--51879	3	19.7	3	80	10	68	60	0	0	40	0.97
51966--52008	21	2.0	21	100	0	86	18	13	4	62	1.48
52456--52503	20	2.4	21	89	10	82	45	16	14	22	1.84
52071--53367	76	17.1	76	91	4	2079	35	21	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53374--53702	166	2.0	168	91	3	538	38	12	14	34	1.84
54216--54270	22	2.5	22	90	0	92	40	14	9	36	1.78
56743--56962	114	1.9	114	88	0	332	30	20	14	34	1.92
58592--58656	32	2.0	32	91	5	105	20	16	18	44	1.87
59259--59337	8	9.4	8	76	10	68	1	16	2	79	0.90
59259--59316	9	6.6	9	74	4	55	1	12	3	82	0.86
59259--59316	26	2.2	26	87	0	80	1	12	3	82	0.86
59260--59332	26	2.9	24	78	17	69	1	15	2	80	0.89
59321--59374	26	2.0	26	96	3	99	3	16	11	68	1.33
59261--59360	43	2.3	43	82	5	112	2	17	5	76	1.06
64290--64342	25	2.1	26	89	3	81	71	0	1	26	0.96
64290--64332	11	3.6	11	80	17	50	72	0	0	27	0.85
64934--64975	20	2.2	19	86	4	57	64	2	0	33	1.07
64843--65067	120	1.9	117	81	4	265	45	8	8	37	1.64
66683--66739	3	18.7	3	82	10	71	61	0	0	38	0.96
72630--73414	264	3.0	262	87	3	1107	37	16	26	19	1.92
75313--75476	78	2.1	78	81	4	186	23	24	17	34	1.96
81184--81223	14	2.8	15	85	14	50	25	5	0	70	1.08
83429--83516	30	2.9	29	80	6	95	20	9	13	56	1.64
85392--85452	32	1.9	32	86	6	88	19	13	11	55	1.67
87442--87505	27	2.4	27	82	10	78	21	15	9	53	1.70
87442--87484	13	3.2	13	78	18	52	18	16	11	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92242--92412	88	2.0	86	91	2	279	28	24	19	27	1.98
92444--92655	43	4.8	45	69	18	140	25	29	18	26	1.98
94221--94285	28	2.2	30	81	10	82	24	9	9	56	1.60

Tables:   1

The End!