genome.fa.s4733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004733.1 Hibiscus syriacus cultivar Beakdansim tig00010685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62944

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1844--1891	17	2.5	20	83	16	66	35	20	12	31	1.90
1891--1964	37	2.0	37	94	0	130	17	29	27	25	1.97
7675--7983	111	2.7	115	84	6	375	42	19	13	24	1.88
10890--10972	33	2.7	29	77	15	87	38	16	1	43	1.56
11122--11989	138	6.3	138	88	2	1233	32	14	12	39	1.84
14927--14987	22	3.0	21	76	9	63	31	16	27	24	1.96
14857--15060	94	2.1	95	80	3	214	32	16	24	26	1.96
15400--15565	59	2.9	58	85	5	221	33	12	20	34	1.89
15940--16539	68	8.8	68	91	1	932	33	14	21	31	1.93
16171--16275	32	3.2	32	63	28	74	32	14	20	33	1.92
16505--16947	81	5.5	81	88	2	635	36	11	24	27	1.90
22922--23540	162	3.9	161	92	2	1000	37	12	11	38	1.80
23649--23866	102	2.1	102	88	2	323	32	19	10	38	1.85
23649--23904	102	2.5	102	84	3	315	33	19	9	37	1.84
24632--24673	14	2.9	14	89	7	57	33	0	2	64	1.07
24632--24751	3	40.0	3	74	15	88	30	2	0	66	1.10
24645--24713	28	2.7	25	82	10	70	30	1	1	66	1.09
27887--28459	138	4.2	138	89	1	808	33	14	12	39	1.83
27886--28459	275	2.1	275	87	1	817	33	14	12	39	1.83
31103--31468	183	2.0	183	100	0	732	22	25	20	31	1.98
35447--35504	21	2.8	21	74	10	55	32	22	20	24	1.98
35492--35767	20	13.6	20	72	11	161	38	25	18	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35553--35764	41	5.2	41	91	1	320	37	25	17	19	1.93
35836--35890	21	2.7	20	80	8	65	21	25	18	34	1.96
35878--36009	20	6.7	20	92	2	180	36	18	19	25	1.95
36863--36916	24	2.2	24	90	0	81	22	18	18	40	1.91
39328--39601	20	14.7	20	75	13	151	39	21	21	17	1.92
39328--39599	40	7.3	38	75	15	171	40	20	20	18	1.92
39426--39512	19	4.8	19	77	16	103	45	17	21	14	1.84
39373--39512	53	2.6	53	84	3	174	42	19	22	15	1.88
39495--39525	14	2.2	14	94	0	53	48	25	19	6	1.72
39457--39540	34	2.5	34	84	0	96	45	21	19	14	1.85
39609--39704	33	2.9	34	88	3	140	13	23	20	41	1.88
39806--39842	14	2.6	14	86	0	56	48	21	0	29	1.50
41217--41295	21	3.8	21	72	9	63	20	17	39	22	1.92
41192--41303	42	2.7	42	80	5	120	22	17	37	22	1.94
41783--41831	20	2.5	20	86	0	71	34	24	20	20	1.96
41874--42015	19	7.7	19	74	12	109	11	16	23	47	1.79
41879--41942	33	1.9	33	90	0	101	7	15	26	50	1.71
42063--42442	94	4.1	94	94	1	647	47	19	12	21	1.81
44143--44186	20	2.2	20	88	8	63	38	22	20	18	1.93
44159--44284	33	3.8	33	90	1	180	45	20	21	12	1.84
44211--44267	14	3.7	14	72	20	51	43	21	24	10	1.83
44192--44289	19	5.7	19	69	22	81	45	20	22	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44285--44377	33	2.8	33	88	1	123	10	19	24	45	1.82
44349--44399	20	2.5	20	87	0	66	13	11	21	52	1.72
44962--45130	40	4.2	40	89	0	248	18	17	23	39	1.92
44962--45130	20	8.4	20	79	6	164	18	17	23	39	1.92
45180--45233	20	2.7	19	75	8	63	16	18	31	33	1.93
46623--46665	2	21.5	2	100	0	86	51	0	0	48	1.00
47868--47927	6	10.2	6	78	10	52	73	1	3	21	1.07
48392--48454	25	2.6	25	97	2	119	38	0	42	19	1.51
49515--49617	9	11.6	9	72	18	56	73	0	4	20	1.07
49502--49639	13	10.5	13	69	16	79	71	0	5	23	1.11
49545--49630	45	1.9	45	84	13	115	74	1	4	19	1.06
49588--49687	40	2.6	38	77	14	98	70	3	3	24	1.16
50209--50320	37	3.0	37	93	0	188	30	15	14	40	1.86
50846--50922	39	2.0	39	82	10	95	75	1	6	16	1.08
50907--51050	77	1.9	77	80	12	170	64	3	2	29	1.21
50963--51029	19	3.5	19	72	14	57	67	2	1	28	1.14
51578--51688	37	3.0	37	96	1	197	30	15	14	39	1.87
51578--51719	73	1.9	73	81	7	171	30	15	12	40	1.85
52158--52450	83	3.5	81	80	9	257	26	17	23	32	1.96
52257--52452	83	2.3	83	86	4	270	28	17	23	31	1.97
52454--52670	67	3.2	66	84	6	249	40	11	18	29	1.86
52647--52691	22	2.1	21	83	4	54	51	15	11	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52562--52792	123	1.9	124	95	0	419	42	13	19	24	1.87
52740--53029	36	8.2	36	83	9	382	38	12	20	27	1.89
52659--53029	101	3.6	101	87	4	465	40	13	19	26	1.88
52841--53029	73	2.6	73	96	0	353	39	14	19	26	1.90
56119--56555	218	2.0	218	95	0	784	27	24	16	31	1.96
58144--58297	4	38.8	4	71	17	56	69	1	3	25	1.11
58189--58315	47	2.7	49	76	14	131	66	2	2	28	1.16
58188--58256	23	3.0	23	73	25	63	66	1	1	30	1.09
58143--58298	41	3.8	40	76	18	117	69	1	3	25	1.10
58306--58359	20	2.7	20	78	18	51	70	5	0	24	1.08
58852--58962	39	2.9	39	91	2	172	36	14	9	40	1.77
58886--58951	21	3.3	21	64	12	57	34	15	7	42	1.75
59778--59835	2	29.0	2	100	0	116	50	0	0	50	1.00

Tables:   1

The End!