Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004736.1 Hibiscus syriacus cultivar Beakdansim tig00010692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65135

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7131--7172
18
2.3
18
95
0
75
19
33
19
28
1.96
22232--22330
36
2.8
35
82
1
126
44
26
1
28
1.61
22849--22962
37
3.2
37
62
20
96
35
23
15
25
1.95
27543--27570
2
14.0
2
100
0
56
50
0
50
0
1.00
35083--35165
29
2.8
29
92
1
139
43
9
14
32
1.78
39850--39932
29
2.8
29
92
1
139
43
9
14
32
1.78
42059--42103
23
2.0
23
95
0
81
22
28
11
37
1.88
45959--45996
3
12.7
3
100
0
76
65
0
0
34
0.93
47295--47412
15
7.5
15
82
13
148
44
0
2
52
1.14
47392--47601
32
7.4
32
69
27
177
36
0
10
53
1.36
47415--47457
22
2.0
22
95
0
77
34
0
11
53
1.37
47310--47467
69
2.3
67
86
6
212
41
0
5
52
1.25
47392--47618
54
4.1
54
88
4
337
35
0
11
53
1.36
47392--47596
112
1.8
112
94
0
365
35
0
10
53
1.36
47554--47601
14
3.1
15
75
21
53
41
0
4
54
1.20
47527--47569
22
2.0
22
95
0
77
41
0
6
51
1.29
47518--47596
18
4.4
18
68
17
56
39
0
7
53
1.30
47638--47690
14
3.5
14
72
18
52
37
0
5
56
1.23
47628--47691
32
2.0
32
96
0
119
35
0
10
53
1.36
47705--47764
31
1.9
31
89
0
93
46
8
5
40
1.56
48407--48646
20
11.6
20
70
13
96
41
20
17
21
1.91
48407--48500
40
2.3
40
83
0
116
42
21
13
22
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48518--48646
40
3.2
40
85
6
172
38
20
19
21
1.93
48538--48646
20
5.4
20
79
8
132
40
18
20
21
1.92
48973--49022
20
2.5
19
87
12
73
16
14
20
50
1.78
48985--49029
20
2.2
21
96
4
83
15
15
17
51
1.77
48998--49042
21
2.1
21
87
0
63
17
15
13
53
1.73
52127--52195
30
2.3
30
92
0
111
30
26
11
31
1.91
57738--57807
35
2.0
35
100
0
140
42
22
5
28
1.76
64642--64682
21
2.0
21
85
0
55
63
7
0
29
1.21

Tables:   1

The End!