genome.fa.s4737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004737.1 Hibiscus syriacus cultivar Beakdansim tig00010696_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105883

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3694--3751	22	2.6	22	100	0	116	34	15	20	29	1.94
15598--15664	14	4.4	14	75	11	53	56	0	1	41	1.08
16064--16119	17	3.2	17	76	16	53	42	0	1	55	1.10
19857--19957	35	2.9	35	82	1	123	42	25	1	29	1.66
23877--23904	7	4.0	7	100	0	56	28	0	0	71	0.86
25403--25471	23	3.0	23	86	0	93	27	24	27	20	1.99
28868--28905	14	2.5	16	83	12	53	47	2	2	47	1.30
33571--33598	14	2.0	14	100	0	56	14	21	14	50	1.78
35358--35458	51	2.0	51	92	0	166	33	20	10	34	1.88
37686--37713	14	2.0	14	100	0	56	14	21	14	50	1.78
38475--38530	26	2.2	26	100	0	112	21	30	17	30	1.96
44474--44498	3	8.3	3	100	0	50	0	0	32	68	0.90
50815--50844	12	2.4	13	88	11	53	60	0	0	40	0.97
52262--52310	27	1.9	25	84	12	64	53	6	2	38	1.38
52324--52660	36	8.8	37	71	18	178	44	6	4	44	1.48
52414--52496	25	3.3	23	72	23	60	46	4	3	44	1.42
52340--52590	126	2.0	127	96	2	472	44	5	4	45	1.49
52448--52477	15	1.9	16	93	6	53	53	6	0	40	1.27
52412--52512	27	3.8	25	71	18	80	45	3	3	46	1.40
52532--52682	71	2.1	69	81	7	169	45	7	3	43	1.49
53275--54359	165	6.6	165	89	2	1474	23	21	26	29	1.99
53275--54400	246	4.6	244	88	2	1479	23	21	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59356--59385	12	2.4	13	88	11	53	60	0	0	40	0.97
59935--59988	22	2.5	22	90	0	90	3	48	31	16	1.64
60704--60753	11	4.8	10	81	16	57	76	0	2	22	0.89
60706--60738	15	2.2	15	94	0	57	75	0	3	21	0.93
60771--60853	41	2.0	42	86	6	116	51	3	3	40	1.37
60814--60948	35	3.8	34	78	14	139	45	6	4	43	1.50
60827--61084	122	2.1	123	94	3	459	44	6	4	44	1.49
60964--61131	36	4.6	36	79	8	126	44	6	3	45	1.47
60949--61148	37	5.4	36	79	10	185	44	7	4	44	1.49
60966--61170	74	2.8	71	80	9	189	44	7	3	43	1.50
61045--61171	37	3.5	34	77	11	101	47	7	3	41	1.48
63307--63348	15	2.6	17	75	24	54	71	4	2	21	1.16
64653--64680	2	14.0	2	100	0	56	50	0	0	50	1.00
64673--64732	9	6.9	9	75	12	54	53	0	0	46	1.00
64681--64732	12	4.3	12	90	0	77	53	0	0	46	1.00
64893--65173	124	2.3	120	85	5	354	25	18	15	40	1.89
64987--65696	113	6.2	113	83	6	738	28	18	14	38	1.90
65111--65696	229	2.6	227	84	4	769	28	18	14	38	1.91
65598--65761	73	2.2	73	83	2	195	32	15	17	34	1.91
67624--67681	16	3.1	19	80	14	68	48	6	5	39	1.52
68020--68100	1	81.0	1	70	0	54	0	14	0	85	0.61
68019--68110	7	12.3	7	80	10	94	0	16	1	82	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68034--68108	9	8.2	9	80	11	82	0	14	1	84	0.70
68019--68110	15	6.1	15	81	13	109	0	16	1	82	0.73
80933--80970	13	2.9	13	88	7	51	39	0	0	60	0.97
80968--81025	3	19.3	3	96	0	80	60	0	0	39	0.97
89126--89184	23	2.4	26	78	16	72	52	1	5	40	1.33
94108--94138	14	2.2	14	94	0	53	58	25	12	3	1.50
94776--94814	19	2.1	19	85	0	51	41	5	12	41	1.65
101623--101788	60	2.8	60	83	2	190	33	18	2	45	1.63
103931--103987	24	2.3	25	91	8	91	33	0	7	59	1.24
104476--104500	13	1.9	13	100	0	50	44	0	8	48	1.32

Tables:   1

The End!