genome.fa.s4739.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004739.1 Hibiscus syriacus cultivar Beakdansim tig00010699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46601

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12243--12405	74	2.2	75	86	4	222	30	28	19	20	1.97
12266--12428	74	2.2	74	85	2	220	31	28	17	21	1.96
12467--12516	21	2.4	21	96	0	91	28	18	36	18	1.94
15074--15203	7	19.0	7	72	17	80	66	0	2	30	1.10
15130--15233	39	2.7	39	77	20	103	62	0	1	35	1.06
15077--15233	14	10.7	14	69	21	65	64	0	2	31	1.11
15433--15459	2	13.5	2	100	0	54	48	0	0	51	1.00
15804--15840	20	2.0	19	85	15	51	27	27	10	35	1.90
16048--16178	60	2.2	60	88	2	192	45	3	14	35	1.63
16406--16437	6	5.3	6	100	0	64	62	0	0	37	0.95
18286--18347	22	2.9	22	95	2	108	37	11	17	33	1.86
18688--18790	54	1.9	54	93	0	179	29	18	20	32	1.96
18763--19245	55	8.9	55	91	3	737	33	20	19	26	1.97
18764--19245	161	3.0	164	91	3	751	33	20	19	26	1.96
18763--19242	216	2.2	218	90	3	754	33	20	19	26	1.96
19687--19819	44	3.0	45	78	7	128	42	10	21	25	1.85
22142--22171	3	10.0	3	100	0	60	66	0	33	0	0.92
28013--28052	17	2.3	18	86	4	55	60	5	17	17	1.54
34628--35103	182	2.6	182	89	3	710	41	14	15	28	1.87
35024--35069	20	2.3	19	78	10	56	54	10	15	19	1.70
37188--37220	15	2.2	15	94	0	57	18	3	63	15	1.43
37307--37346	21	1.9	21	84	0	53	42	12	25	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37380--37445	33	2.0	33	90	0	105	31	0	45	22	1.53
39249--39294	19	2.4	19	92	0	74	34	0	8	56	1.30
39559--40288	202	3.7	191	86	6	819	36	14	16	32	1.89
45067--45753	196	3.5	190	79	10	611	39	14	16	30	1.87
46038--46072	14	2.4	14	90	4	52	22	0	8	68	1.16
46165--46222	30	2.0	29	89	3	89	39	13	12	34	1.82

Tables:   1

The End!