genome.fa.s474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000474.1 Hibiscus syriacus cultivar Beakdansim tig00000882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109455

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2708--3051	171	2.0	171	98	0	661	28	15	22	33	1.95
4196--4282	35	2.5	34	80	12	97	55	10	8	26	1.61
4500--4540	3	13.7	3	94	0	73	2	34	29	34	1.71
6602--6637	17	2.1	18	94	5	65	63	2	5	27	1.30
6695--6720	10	2.6	10	100	0	52	53	0	30	15	1.42
18819--18863	18	2.5	18	85	0	63	26	31	17	24	1.97
20356--20446	32	2.9	31	81	12	107	35	19	16	28	1.94
20355--20446	30	3.0	30	82	10	114	34	20	16	28	1.94
23559--23603	21	2.1	21	87	0	63	31	28	24	15	1.96
24403--24558	31	5.0	31	89	1	233	21	20	21	36	1.95
27699--27743	21	2.1	21	87	0	63	31	28	24	15	1.96
28545--28700	31	5.0	31	90	1	233	20	19	22	37	1.95
30226--30303	32	2.5	31	79	4	86	39	16	17	25	1.91
31409--31450	21	2.1	20	82	8	50	35	21	7	35	1.81
34731--34770	14	2.9	15	75	17	50	65	0	0	35	0.93
40204--40228	13	1.9	13	100	0	50	24	8	12	56	1.62
41405--41430	4	6.5	4	100	0	52	23	0	23	53	1.46
44670--44735	3	22.0	3	100	0	132	33	0	0	66	0.92
46074--46463	185	2.1	184	88	3	588	43	3	7	46	1.48
47144--47207	29	2.2	29	85	0	83	32	3	42	21	1.69
47889--48088	72	2.7	74	79	8	178	38	14	20	27	1.91
48026--48478	39	11.8	39	88	2	602	36	16	19	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48481--48875	78	5.1	77	78	6	426	41	12	15	29	1.85
48456--48872	155	2.7	153	89	3	614	41	13	15	29	1.85
58965--59004	21	1.9	21	85	10	55	35	10	2	52	1.48
65803--65858	29	1.9	29	88	0	85	35	3	41	19	1.69
65803--65866	29	2.2	29	85	0	83	32	4	40	21	1.74
68946--69006	23	2.7	23	86	0	86	16	22	26	34	1.95
69605--69677	35	2.1	35	97	0	137	39	2	23	34	1.69
72795--72850	27	2.1	27	89	0	85	48	0	1	50	1.11
74451--74479	12	2.4	12	100	0	58	6	20	31	41	1.79
76653--76724	33	2.2	33	85	7	92	22	5	4	68	1.28
76891--77031	68	2.1	68	100	0	282	51	9	2	35	1.50
81541--81580	22	1.9	20	90	10	62	65	0	7	27	1.20
81741--81783	3	14.3	3	85	0	59	30	32	2	34	1.71
83662--83730	32	2.2	31	82	12	86	63	2	0	33	1.09
83653--83732	33	2.4	33	78	17	85	62	2	0	35	1.09
85135--85167	16	2.1	16	94	0	57	57	24	9	9	1.58
85236--85296	16	3.8	16	95	0	113	55	22	13	8	1.64
85713--85760	10	4.4	10	78	19	51	52	25	12	10	1.71
85713--85768	24	2.3	24	96	0	103	53	23	12	10	1.69
85720--85775	14	4.3	14	80	17	66	51	26	12	8	1.69
93055--93126	25	2.8	25	69	23	60	62	4	6	26	1.39
93612--93651	18	2.2	18	95	0	71	20	20	32	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96359--96579	110	2.0	111	94	0	390	45	9	8	37	1.67
96704--96742	20	2.0	19	90	5	60	43	0	23	33	1.54
96867--96992	51	2.5	51	88	1	182	19	31	33	15	1.93
100469--100498	4	7.5	4	100	0	60	0	23	0	76	0.78
102353--102510	60	2.7	59	78	5	147	34	21	5	38	1.77

Tables:   1

The End!