genome.fa.s4740.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004740.1 Hibiscus syriacus cultivar Beakdansim tig00010700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84353

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1998--2069	31	2.3	31	82	0	90	13	20	16	48	1.80
3065--3154	44	2.0	44	89	4	137	36	20	10	33	1.86
11059--11123	31	2.1	30	82	2	76	36	12	1	49	1.50
13057--13101	21	2.1	21	91	0	72	17	24	17	40	1.91
13057--13109	21	2.5	21	84	0	61	20	22	18	37	1.94
13137--13181	20	2.2	20	92	0	72	46	15	13	24	1.82
13103--13212	20	5.4	20	73	6	62	42	15	19	22	1.88
13408--13473	22	3.0	22	82	4	80	24	36	15	24	1.93
13812--13864	20	2.7	20	90	0	79	16	18	26	37	1.93
15702--15880	20	9.6	20	77	17	170	42	21	18	17	1.89
15923--16011	20	4.4	20	86	0	106	20	17	22	39	1.92
16495--16536	21	2.2	19	87	12	59	21	35	19	23	1.96
17975--18010	14	2.6	14	90	0	54	30	0	22	47	1.52
18116--18211	33	2.8	33	88	3	129	41	19	23	14	1.89
18253--18345	20	4.8	19	80	7	107	19	19	23	37	1.94
18255--18345	39	2.3	40	86	3	123	18	19	24	37	1.94
20777--20830	24	2.2	24	93	0	90	40	20	18	20	1.91
21673--21719	20	2.3	20	92	0	76	21	19	27	31	1.97
21706--21799	20	4.7	20	84	2	125	22	21	20	36	1.95
21694--21840	61	2.4	60	76	7	161	25	19	22	32	1.97
28221--28297	36	2.1	36	90	0	127	14	37	12	35	1.84
37694--37795	34	2.8	37	88	10	158	43	13	14	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37691--37821	37	3.6	37	82	10	162	41	14	12	30	1.83
38217--38261	2	22.5	2	100	0	90	48	0	0	51	1.00
38441--38469	2	14.5	2	100	0	58	48	0	0	51	1.00
38733--38766	9	3.8	9	92	7	52	20	2	0	76	0.92
38733--38767	13	2.6	14	90	4	54	20	2	0	77	0.90
41750--41798	20	2.4	21	82	6	64	77	6	14	2	1.05
42402--42478	22	3.5	22	90	0	127	38	25	14	20	1.91
43046--44631	105	15.3	105	89	4	2366	33	25	17	22	1.96
43046--44631	205	7.7	205	92	1	2546	33	25	17	22	1.96
45179--45280	34	2.8	37	89	10	167	43	14	14	27	1.85
45176--45306	37	3.6	37	83	10	171	41	15	12	29	1.84
45671--45710	18	2.3	18	83	8	57	25	5	2	67	1.23
45825--45859	17	2.1	17	88	0	52	40	5	0	54	1.24
45909--45933	2	12.5	2	100	0	50	48	0	0	52	1.00
46190--46223	9	3.8	9	92	7	52	20	2	0	76	0.92
46190--46224	13	2.6	14	90	4	54	20	2	0	77	0.90
49505--49602	20	4.8	20	77	3	88	36	23	18	21	1.95
49446--49602	41	3.9	41	70	11	126	38	25	17	18	1.93
49569--49639	20	3.5	20	81	7	65	40	25	18	15	1.89
49569--49798	40	5.8	40	86	2	223	36	25	17	20	1.94
49608--49798	20	9.6	20	86	4	215	34	25	17	22	1.96
50481--50527	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50702--50726	12	2.1	12	100	0	50	72	0	28	0	0.86
53009--53320	19	17.7	19	80	16	386	46	17	21	14	1.84
53009--53314	33	8.8	34	87	9	335	46	17	21	13	1.83
53037--53320	52	5.3	52	90	8	407	46	16	22	14	1.84
53242--53296	14	3.6	14	76	21	56	47	20	21	10	1.80
53310--53379	19	3.6	19	96	3	131	15	22	17	44	1.86
53486--53522	14	2.6	14	91	0	65	45	21	0	32	1.52
55491--55547	14	3.7	14	77	20	60	45	22	21	10	1.82
55472--55564	33	2.8	33	95	0	168	47	21	20	10	1.80
55435--55569	19	7.6	19	76	16	128	45	23	19	11	1.82
55565--55677	19	6.5	19	74	19	120	7	17	28	46	1.74
55565--55656	33	2.8	33	93	3	150	7	18	28	45	1.76
55595--55693	19	5.4	18	76	12	80	9	18	27	45	1.79
55741--56023	93	3.1	93	98	0	541	46	18	12	22	1.83
57744--57827	19	4.7	19	78	14	97	45	22	21	10	1.82
57722--57827	52	2.0	52	94	0	185	46	20	22	10	1.81
57839--57895	14	3.7	14	75	20	60	8	24	22	43	1.81
57853--57941	19	4.9	19	72	15	80	11	23	21	43	1.84
57823--57941	33	3.4	33	88	6	157	10	22	22	44	1.82
58033--58103	33	2.2	33	94	0	124	47	16	23	11	1.79
58285--58339	22	2.5	22	81	0	74	20	16	40	23	1.91
58486--58679	20	9.6	20	79	5	203	19	20	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58486--58679	60	3.2	60	83	0	244	19	20	24	35	1.95
60331--60360	16	1.9	15	93	6	51	20	0	3	76	0.92
60691--60720	2	15.5	2	93	6	53	50	0	0	50	1.00
62308--62540	96	2.5	91	81	6	236	20	8	26	44	1.80
62363--62551	92	2.0	93	84	3	247	19	8	25	46	1.78
62566--62657	22	4.1	22	67	8	78	10	11	28	48	1.73
62521--62657	67	2.0	67	92	0	229	13	10	29	45	1.78
75493--75530	16	2.4	16	86	4	51	39	13	21	26	1.89
75688--75778	22	4.2	22	91	1	148	25	19	25	29	1.99
75686--75778	44	2.1	43	96	2	168	24	19	25	30	1.98
78432--78469	20	1.9	20	94	0	67	47	5	21	26	1.71
78434--78476	20	2.3	19	84	8	52	53	4	16	25	1.62
79452--79506	29	1.9	29	88	3	85	54	0	3	41	1.18
83230--83312	32	2.5	34	82	5	98	38	0	2	59	1.11
83239--83318	35	2.3	35	83	14	103	36	0	1	62	1.03

Tables:   1

The End!