Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004742.1 Hibiscus syriacus cultivar Beakdansim tig00010703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109929

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
769--797
15
1.9
15
100
0
58
41
0
10
48
1.37
3482--3530
24
1.9
25
88
12
73
10
10
22
57
1.62
8705--9545
98
8.6
98
82
6
998
20
19
24
35
1.96
8713--9447
189
3.9
189
92
2
1202
19
20
24
34
1.96
17410--17451
20
2.1
20
86
8
59
73
2
0
23
0.94
17412--17448
13
2.9
13
84
15
51
70
2
0
27
1.01
19986--20042
29
2.0
29
89
0
87
45
14
12
28
1.80
20645--20721
22
3.5
22
89
1
111
31
27
11
29
1.92
20892--21021
62
2.2
59
83
4
152
26
11
26
35
1.91
20863--20980
42
2.9
42
82
7
127
27
11
27
33
1.90
20869--21021
20
7.5
21
72
9
120
26
11
27
34
1.91
30609--30650
21
1.9
22
85
9
59
50
4
2
42
1.36
42018--42057
21
1.9
21
89
0
62
10
25
40
25
1.86
57181--57217
6
6.2
6
100
0
74
35
0
0
64
0.94
58346--58390
23
1.9
24
86
4
65
28
0
2
68
1.01
60544--60575
2
16.0
2
100
0
64
50
0
0
50
1.00
66749--66831
21
3.9
21
78
10
80
22
36
25
15
1.94
70284--70333
20
2.5
20
84
9
59
32
12
2
54
1.49
80673--80749
3
26.7
3
87
12
117
0
32
0
67
0.91
81321--81378
19
3.1
19
84
0
71
29
0
3
67
1.07
81328--81379
22
2.4
22
86
0
68
32
0
1
65
1.04
81327--81379
3
19.0
3
81
14
60
32
0
1
66
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85231--85272
7
6.0
7
81
8
50
14
16
14
54
1.71
85231--85272
15
3.0
14
83
10
50
14
16
14
54
1.71
85332--85387
27
2.1
27
86
0
76
21
12
7
58
1.57
87010--87055
2
23.0
2
100
0
92
50
0
0
50
1.00
87355--87423
14
4.9
14
79
10
61
79
1
15
2
0.92
87364--87417
21
2.5
22
76
14
58
83
1
11
3
0.85
87347--87417
11
6.6
10
81
12
63
80
1
15
2
0.90
89700--89916
114
1.9
114
93
0
371
33
15
21
30
1.94
90097--90159
31
2.0
31
90
0
99
33
20
15
30
1.94
92493--92567
22
3.4
22
90
0
123
34
13
12
40
1.81
93513--93762
76
3.3
76
92
2
396
25
20
21
32
1.97
93789--94515
113
6.4
113
89
3
1117
37
14
19
28
1.91
93789--94514
338
2.1
338
91
2
1154
36
14
19
28
1.91
94753--94816
22
2.9
22
80
2
74
31
0
3
65
1.08
94763--94815
3
19.0
3
77
14
51
33
0
1
64
1.05
95242--95280
19
2.1
19
90
0
60
76
2
15
5
1.06
101321--101418
31
3.2
31
77
7
103
43
6
4
45
1.47
101944--101981
16
2.4
16
82
4
51
71
10
0
18
1.14
106972--107010
11
3.7
10
83
10
51
74
0
12
12
1.08
107041--107071
13
2.3
13
94
5
53
77
0
6
16
0.97
107084--107123
20
2.0
21
85
5
55
52
0
12
35
1.39
107227--107301
24
3.1
24
74
14
64
70
4
0
25
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109006--109084
32
2.4
34
83
12
112
34
11
16
37
1.85
109155--109600
36
13.0
36
72
14
217
42
11
19
26
1.85
109168--109231
21
3.4
20
70
26
59
40
9
21
28
1.84
109164--109600
73
6.4
70
69
16
211
42
11
19
26
1.86
109184--109521
137
2.5
135
86
7
474
41
10
20
27
1.86
109453--109600
35
4.2
35
81
4
181
43
12
18
25
1.85
109453--109617
36
4.7
35
81
3
107
43
13
18
24
1.86

Tables:   1

The End!