genome.fa.s4743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004743.1 Hibiscus syriacus cultivar Beakdansim tig00010705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119670

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470--494	13	1.9	13	100	0	50	52	0	0	48	1.00
2621--2790	85	2.0	85	97	0	322	33	23	8	34	1.85
9605--9666	23	2.9	21	85	9	72	38	1	1	58	1.18
10823--10856	17	2.0	17	94	0	59	38	11	11	38	1.79
11268--11321	13	4.2	13	75	17	58	48	12	3	35	1.60
11307--11405	33	3.0	33	94	1	164	45	15	7	32	1.73
11400--11439	21	1.9	21	94	0	71	47	7	15	30	1.72
13726--13771	12	3.6	12	81	16	56	17	19	17	45	1.85
13725--13764	15	2.9	14	85	14	57	20	17	15	47	1.83
18371--18420	22	2.2	22	89	10	75	34	4	0	62	1.14
21072--21115	17	2.7	15	80	19	52	59	0	4	36	1.18
22662--22802	72	2.0	71	83	4	176	35	17	15	31	1.91
25259--25301	17	2.4	18	85	11	54	55	2	4	37	1.33
32511--32584	31	2.3	32	79	2	78	35	12	20	32	1.89
34286--34310	1	25.0	1	100	0	50	0	0	0	100	0.00
36539--36595	21	2.8	21	91	2	98	54	19	7	19	1.66
37662--37736	32	2.5	32	79	16	88	44	0	0	56	0.99
37665--37743	15	5.3	15	76	8	72	43	0	0	56	0.99
37725--37751	10	2.7	10	100	0	54	37	0	0	62	0.95
39552--39591	21	1.9	21	94	0	71	17	37	22	22	1.94
40109--40215	34	3.1	34	89	0	169	52	5	4	37	1.46
40323--40352	14	2.1	14	93	0	51	60	10	0	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40618--41468	127	6.7	127	93	0	1418	32	20	23	23	1.98
46637--46663	14	1.9	14	100	0	54	25	51	14	7	1.68
50870--51046	36	4.9	36	90	2	221	33	22	24	18	1.96
50870--51046	72	2.5	72	88	0	255	33	22	24	18	1.96
55428--55505	36	2.1	38	85	4	106	35	3	2	57	1.30
56092--56124	2	16.5	2	93	0	57	45	0	3	51	1.16
66915--66954	21	1.9	22	90	10	66	27	0	12	60	1.33
69643--69784	70	2.0	70	98	0	275	34	19	12	33	1.89
82937--82969	15	2.1	16	88	5	50	36	27	15	21	1.93
89721--89785	2	32.5	2	100	0	130	49	0	0	50	1.00
94632--94673	7	6.0	7	81	8	50	14	16	14	54	1.71
94632--94673	15	3.0	14	83	10	50	14	16	14	54	1.71
94733--94792	27	2.3	26	82	2	75	21	11	8	58	1.59
96757--96833	15	5.2	15	72	17	63	79	2	16	1	0.92
96762--96832	26	2.7	26	73	12	65	80	2	15	1	0.90
99059--99284	114	2.0	114	91	0	362	32	16	21	29	1.95
101849--101901	22	2.4	22	83	0	70	32	15	15	37	1.88
102301--102846	112	4.9	113	87	2	685	38	14	18	28	1.90
102303--102846	225	2.4	222	86	1	719	38	14	18	28	1.90
102799--102862	19	3.3	19	65	26	53	46	7	26	18	1.76
102798--102865	22	3.3	22	66	26	67	48	7	26	17	1.73
102786--102885	39	2.6	39	100	0	200	46	8	24	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102676--102994	150	2.1	151	92	1	534	40	11	20	27	1.87
102564--103106	262	2.1	264	90	1	849	39	12	20	28	1.89
102825--103121	112	2.6	112	93	1	497	38	12	19	29	1.88
110075--110158	6	14.2	6	93	2	134	20	33	28	17	1.95
118726--118777	25	2.0	27	85	11	72	59	3	1	34	1.27

Tables:   1

The End!